FMO01249.5prime Sequence
546 bp (546 high quality bases) assembled on 2008-03-12
> FMO01249.5prime
TAAAATACAAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACT
GCTCAATCGCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCT
CCGCCGGTCTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATC
ATCGGTCCCCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCT
GATCTTCCCCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCA
CCGAAATCTGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCG
ATCCTCCACGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGA
GCGCTGGCTACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCT
CCATGCTCACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCC
AAGGAGTACCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTG
CGTCCGCCGTAGTCAGGAGGAGGTGGAAGCAAGCTTTCTAGACCAT
FMO01249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc87F-RA | 660 | CG9602-RA | 72..578 | 22..528 | 2535 | 100 | Plus |
| CG40045-RB | 868 | CG40045-RB | 427..722 | 160..455 | 310 | 74.1 | Plus |
| CG40045-RA | 740 | CG40045-RA | 299..594 | 160..455 | 310 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13717536..13718042 | 528..22 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 24035432..24035713 | 174..455 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:17 has no hits.
FMO01249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:24:39 Download gff for
FMO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 45..568 | 7..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:30 Download gff for
FMO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9602-RA | 55..578 | 7..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:28 Download gff for
FMO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc87F-RA | 55..578 | 7..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:28 Download gff for
FMO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13717536..13718048 | 13..528 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:30 Download gff for
FMO01249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9543258..9543770 | 13..528 | 99 | <- | Minus |
