Clone FMO01250 Report

Search the DGRC for FMO01250

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:50
Vector:pMK33-CFH-BD
Associated Gene/Transcriptcbx-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01250.5prime Sequence

668 bp (668 high quality bases) assembled on 2008-03-12

> FMO01250.5prime
CAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCC
AGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGG
CTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTT
TTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATT
CATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTT
CCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACC
TGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTA
GATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGA
GGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATA
TATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAG
TTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAG
AAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAA
CTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAG
GCAAGCTTTCTAGACCAT

FMO01250.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..825 9..650 3210 100 Plus
cbx-RA 1036 CG10536-RA 312..953 9..650 3210 100 Plus
cbx-RC 766 CG10536-RC 135..456 9..348 1420 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864593..9865070 650..173 2390 100 Minus
2R 25286936 2R 9865124..9865227 173..70 520 100 Minus
2R 25286936 2R 9865290..9865350 69..9 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:48:57 has no hits.

FMO01250.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:35 Download gff for FMO01250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-RB 165..809 9..654 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:15 Download gff for FMO01250.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 9..654 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:58 Download gff for FMO01250.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 9..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:58 Download gff for FMO01250.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864589..9865069 174..654 99 <- Minus
2R 9865124..9865227 70..173 100 <- Minus
2R 9865290..9865356 1..69 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:15 Download gff for FMO01250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752094..5752574 174..654 99 <- Minus
arm_2R 5752629..5752732 70..173 100 <- Minus
arm_2R 5752795..5752861 1..69 94   Minus