FMO01251.5prime Sequence
1187 bp (874 high quality bases) assembled on 2008-03-12
> FMO01251.5prime
AAAAAGCCAAGTCCTCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTG
CAGGATGACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGT
CTACAGAGACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGG
GTCCGGTGGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCC
CCGCACGACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTG
TATTATCGTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGC
ACTTCGATGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGG
GTTCAGGAGCTGGCCGTTGGCTATCCGGAGGGTCGCATCGAGTTGCAGTT
GATTGGTGGCTATCGCGATGCCAAGGGATATGGTTTGGACGTATTCTTCA
GCATTATGCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAG
GCTTGCGTGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCC
CATCATCTATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGG
CCTCCTTTCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATC
TTCATGGGCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCAT
GCTACGCATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGT
GGCTATCACAAACGGGATGAGGTTCTGTTGCAGCACTGTCCTCCAGTCCA
GACGTGGAGCGCCTCACTTGCGCCTCAGACGCGTGCACCATTAGGTTTAT
ACAGGAGATCAGTCCCCGCGTCACGATTTCAGGACAATCGGCGCGCTACT
TCGGCGGGATGACGCCACGGGCTTCTGGGTGCTGAACAAGATGCAAGCTT
TCTAAGACATTCGTTTGGCGCGCTGGGCCCAGGTAGTGGTCATATCATAT
CTAATCATAATCTATCCACTAGCCTAGAAATCCTGGTCATGACTAGGCTG
ATTCCCACAATAAAAACGTCGGGGGCACGACGTCCGAACAAATTCAGATG
GATCTGAGCGATATCGGAACTTTACAAAGGAGTCAAGCGAACCGGATCAT
TACGCCGGCATGACAGTCATTGCAAATACGGTGTAGA
FMO01251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 1450 | CG5473-RB | 359..1288 | 24..942 | 4225 | 97.9 | Plus |
| SP2637-RA | 1340 | CG5473-RA | 249..1178 | 24..942 | 4225 | 97.9 | Plus |
| SP2637-RD | 1876 | CG5473-RD | 359..1279 | 24..934 | 4205 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18642404..18642657 | 277..24 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 18641857..18642067 | 670..460 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18642132..18642315 | 459..276 | 845 | 97.3 | Minus |
| 2R | 25286936 | 2R | 18641655..18641797 | 810..668 | 605 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:05 has no hits.
FMO01251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:37 Download gff for
FMO01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5473-RB | 347..1290 | 16..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:23 Download gff for
FMO01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1184 | 16..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:12 Download gff for
FMO01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1184 | 16..950 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:12 Download gff for
FMO01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641635..18641796 | 669..828 | 96 | <- | Minus |
| 2R | 18641859..18642067 | 460..668 | 100 | <- | Minus |
| 2R | 18642132..18642314 | 277..459 | 97 | <- | Minus |
| 2R | 18642405..18642661 | 16..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:23 Download gff for
FMO01251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14529140..14529301 | 669..828 | 96 | <- | Minus |
| arm_2R | 14529364..14529572 | 460..668 | 100 | <- | Minus |
| arm_2R | 14529637..14529819 | 277..459 | 97 | <- | Minus |
| arm_2R | 14529910..14530166 | 16..276 | 98 | | Minus |
