Clone FMO01252 Report

Search the DGRC for FMO01252

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10981-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01252.5prime Sequence

1238 bp (324 high quality bases) assembled on 2008-03-12

> FMO01252.5prime
ATAATACGAAGTTATCAATCCACATGTCAGATTCCACTATTTTCCGTTTT
AGCTCCTCCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAG
CTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAG
AATCCAATTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAA
TCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGT
GGAGCGTGATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCA
GCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGC
AATAACCCCTTAAATATGGGTAACTTGTCTGTCTCGACTGAAGATGCTCA
TTCGCAGATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGT
TGGATCGCATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACC
TTCGCCACGAGAACCTCAGCGCCTACAACTCGTAGAATTCGCCGCAGAAC
GAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTG
TTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACC
CCCGAAGGCCCAAGAAGTCGCACAGTGAATCTTCACTCTAACGACTCCCT
CACCATTCTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCG
ACGTTGCGTCGCCACCAAAACGCGTTAATCGCGACATTGATGAGTCCCAA
AAAGAGGAGTTATACAAGTGCGCCATCTGCATGGACAGTGTATCGAGCGC
GAGCCAGTGTCACCAAATGTGGACACGTCTTCTGCCGCGAATGCTTCGAA
ACAGCCATCAGAGCTACGCACAAGTGCTCATATGCAACAAGAAGCTGACA
GCACGTCATTCTTTCGCATTACATGGCAAGCTTTCTGAACATTCGATTGG
CGCGCGGGCCCAGGTAAGATGTTCTATCCTATCTATCATATTCTTATTCA
AGCTAATCTAGGAGATCTGACATGACTAGTGGCTGGATCTCACACTAAAA
AGGCTCGGTGTAACGAGTCTGACAAATCGGATGGAGTCTAGGCTATTACT
GATTTTCAGGATTCACGGAGTCGAGTACAGATAAACAGCTGACACATTGC
GAAGAGGTGGAAATATTCATAATGAGAGGCATATTGTC

FMO01252.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
dgrn-RA 1632 CG10981-RA 335..1285 24..970 4490 98.4 Plus
dgrn-RD 1635 CG10981-RD 335..1288 24..970 4455 98.2 Plus
dgrn-RB 1611 CG10981-RB 362..1264 72..970 4295 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5825038..5825444 53..459 2005 99.5 Plus
3R 32079331 3R 5825805..5826229 550..970 1850 97.9 Plus
3R 32079331 3R 5825499..5825588 460..549 420 97.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:16:54 has no hits.

FMO01252.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:38 Download gff for FMO01252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10981-RA 341..1305 17..980 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:55 Download gff for FMO01252.5prime
Subject Subject Range Query Range Percent Splice Strand
dgrn-RA 341..1305 17..980 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:00 Download gff for FMO01252.5prime
Subject Subject Range Query Range Percent Splice Strand
dgrn-RA 331..1295 17..980 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:00 Download gff for FMO01252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5825036..5825444 51..459 99 -> Plus
3R 5825499..5825588 460..549 97 -> Plus
3R 5825805..5826239 550..980 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:55 Download gff for FMO01252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1651527..1651961 550..980 97 == Plus
arm_3R 1650758..1651166 51..459 99 -> Plus
arm_3R 1651221..1651310 460..549 97 -> Plus