FMO01252.5prime Sequence
1238 bp (324 high quality bases) assembled on 2008-03-12
> FMO01252.5prime
ATAATACGAAGTTATCAATCCACATGTCAGATTCCACTATTTTCCGTTTT
AGCTCCTCCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAG
CTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAG
AATCCAATTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAA
TCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGT
GGAGCGTGATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCA
GCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGC
AATAACCCCTTAAATATGGGTAACTTGTCTGTCTCGACTGAAGATGCTCA
TTCGCAGATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGT
TGGATCGCATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACC
TTCGCCACGAGAACCTCAGCGCCTACAACTCGTAGAATTCGCCGCAGAAC
GAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTG
TTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACC
CCCGAAGGCCCAAGAAGTCGCACAGTGAATCTTCACTCTAACGACTCCCT
CACCATTCTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCG
ACGTTGCGTCGCCACCAAAACGCGTTAATCGCGACATTGATGAGTCCCAA
AAAGAGGAGTTATACAAGTGCGCCATCTGCATGGACAGTGTATCGAGCGC
GAGCCAGTGTCACCAAATGTGGACACGTCTTCTGCCGCGAATGCTTCGAA
ACAGCCATCAGAGCTACGCACAAGTGCTCATATGCAACAAGAAGCTGACA
GCACGTCATTCTTTCGCATTACATGGCAAGCTTTCTGAACATTCGATTGG
CGCGCGGGCCCAGGTAAGATGTTCTATCCTATCTATCATATTCTTATTCA
AGCTAATCTAGGAGATCTGACATGACTAGTGGCTGGATCTCACACTAAAA
AGGCTCGGTGTAACGAGTCTGACAAATCGGATGGAGTCTAGGCTATTACT
GATTTTCAGGATTCACGGAGTCGAGTACAGATAAACAGCTGACACATTGC
GAAGAGGTGGAAATATTCATAATGAGAGGCATATTGTC
FMO01252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 1632 | CG10981-RA | 335..1285 | 24..970 | 4490 | 98.4 | Plus |
dgrn-RD | 1635 | CG10981-RD | 335..1288 | 24..970 | 4455 | 98.2 | Plus |
dgrn-RB | 1611 | CG10981-RB | 362..1264 | 72..970 | 4295 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825038..5825444 | 53..459 | 2005 | 99.5 | Plus |
3R | 32079331 | 3R | 5825805..5826229 | 550..970 | 1850 | 97.9 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 460..549 | 420 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:54 has no hits.
FMO01252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:38 Download gff for
FMO01252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 341..1305 | 17..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:55 Download gff for
FMO01252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 341..1305 | 17..980 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:00 Download gff for
FMO01252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 331..1295 | 17..980 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:00 Download gff for
FMO01252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5825036..5825444 | 51..459 | 99 | -> | Plus |
3R | 5825499..5825588 | 460..549 | 97 | -> | Plus |
3R | 5825805..5826239 | 550..980 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:55 Download gff for
FMO01252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1651527..1651961 | 550..980 | 97 | == | Plus |
arm_3R | 1650758..1651166 | 51..459 | 99 | -> | Plus |
arm_3R | 1651221..1651310 | 460..549 | 97 | -> | Plus |