Clone FMO01253 Report

Search the DGRC for FMO01253

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCul-3-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01253.5prime Sequence

1194 bp (926 high quality bases) assembled on 2008-03-12

> FMO01253.5prime
ATAACCAACTTATCAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAA
GGAGGGCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGT
ACGTGGAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAG
AAAAAGAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTA
CAACATGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGG
AGGTCGTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAG
GCTCTGCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCA
CCAGACATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAG
TTTATGTGCAGCAGCGCGAGGTAGACAATGTGTATTATTTGGGATTAATT
TTGTTCAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCG
AGAGAAGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTA
ACCATCTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATT
AACTCGCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCA
ATCGGCGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACA
ACGCTGGCGTTTACATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCT
TCCCGGGCAGCGCTGTATCTCGATAAGATACGGAGCTTCGCATTGTGCGC
GTGGTCGAAGAAGAGCTGATCAAAAAGCACATGCGACTCATTGTTGAAAT
GGAAAACTCGGGCGTGGTGTAAATGATCAAGACTCAAAGACTGAAGATCT
GGCCTGCACATATTAAGCTTTTCTCGCGCTGAAGACGAGGTCTCAGGTGA
TAGCGGACCATGTCGCCTATCTGCGAGAGCAGGACGCATGCTGTTAGGAA
GAAGAAACGCAACCGAATCCCATAACATTCTGCCGACTTGCTGATCTCAG
ACGCTTCGAACAGTTTCTGGTCATCGTTCGCCACGATTCCATTCAACCGT
CATCTATCGATTTGAACTTTCTGACCTAATACAAATTCGGAATCTATGCT
TATACTCGAGACAACTGAAGGGTGCCAAGGAATAGTAGCCTCAC

FMO01253.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 3272 CG11861-RB 605..1689 21..1083 4645 96.6 Plus
Cul3-RC 3037 CG11861-RA 370..1454 21..1083 4645 96.6 Plus
Cul3-RD 4332 CG11861-RC 881..1965 21..1083 4645 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15268293..15268760 929..463 2090 97.9 Minus
2L 23513712 2L 15268819..15269205 467..81 1905 99.5 Minus
2L 23513712 2L 15270904..15270965 82..21 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:24:46 has no hits.

FMO01253.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:40 Download gff for FMO01253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-RB 600..1699 14..1092 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:52 Download gff for FMO01253.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RD 876..1975 14..1092 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:25 Download gff for FMO01253.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul3-RD 876..1975 14..1092 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:25 Download gff for FMO01253.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15268108..15268757 466..1092 94 <- Minus
2L 15268821..15269204 82..465 99 <- Minus
2L 15270905..15270970 14..81 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:52 Download gff for FMO01253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15268108..15268757 466..1092 94 <- Minus
arm_2L 15268821..15269204 82..465 99 <- Minus
arm_2L 15270905..15270970 14..81 94   Minus