FMO01253.5prime Sequence
1194 bp (926 high quality bases) assembled on 2008-03-12
> FMO01253.5prime
ATAACCAACTTATCAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAA
GGAGGGCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGT
ACGTGGAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAG
AAAAAGAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTA
CAACATGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGG
AGGTCGTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAG
GCTCTGCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCA
CCAGACATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAG
TTTATGTGCAGCAGCGCGAGGTAGACAATGTGTATTATTTGGGATTAATT
TTGTTCAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCG
AGAGAAGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTA
ACCATCTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATT
AACTCGCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCA
ATCGGCGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACA
ACGCTGGCGTTTACATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCT
TCCCGGGCAGCGCTGTATCTCGATAAGATACGGAGCTTCGCATTGTGCGC
GTGGTCGAAGAAGAGCTGATCAAAAAGCACATGCGACTCATTGTTGAAAT
GGAAAACTCGGGCGTGGTGTAAATGATCAAGACTCAAAGACTGAAGATCT
GGCCTGCACATATTAAGCTTTTCTCGCGCTGAAGACGAGGTCTCAGGTGA
TAGCGGACCATGTCGCCTATCTGCGAGAGCAGGACGCATGCTGTTAGGAA
GAAGAAACGCAACCGAATCCCATAACATTCTGCCGACTTGCTGATCTCAG
ACGCTTCGAACAGTTTCTGGTCATCGTTCGCCACGATTCCATTCAACCGT
CATCTATCGATTTGAACTTTCTGACCTAATACAAATTCGGAATCTATGCT
TATACTCGAGACAACTGAAGGGTGCCAAGGAATAGTAGCCTCAC
FMO01253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cul3-RE | 3272 | CG11861-RB | 605..1689 | 21..1083 | 4645 | 96.6 | Plus |
Cul3-RC | 3037 | CG11861-RA | 370..1454 | 21..1083 | 4645 | 96.6 | Plus |
Cul3-RD | 4332 | CG11861-RC | 881..1965 | 21..1083 | 4645 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15268293..15268760 | 929..463 | 2090 | 97.9 | Minus |
2L | 23513712 | 2L | 15268819..15269205 | 467..81 | 1905 | 99.5 | Minus |
2L | 23513712 | 2L | 15270904..15270965 | 82..21 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:46 has no hits.
FMO01253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:40 Download gff for
FMO01253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11861-RB | 600..1699 | 14..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:52 Download gff for
FMO01253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cul-3-RD | 876..1975 | 14..1092 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:25 Download gff for
FMO01253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cul3-RD | 876..1975 | 14..1092 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:25 Download gff for
FMO01253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15268108..15268757 | 466..1092 | 94 | <- | Minus |
2L | 15268821..15269204 | 82..465 | 99 | <- | Minus |
2L | 15270905..15270970 | 14..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:52 Download gff for
FMO01253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15268108..15268757 | 466..1092 | 94 | <- | Minus |
arm_2L | 15268821..15269204 | 82..465 | 99 | <- | Minus |
arm_2L | 15270905..15270970 | 14..81 | 94 | | Minus |