FMO01254.5prime Sequence
1222 bp (1006 high quality bases) assembled on 2008-03-12
> FMO01254.5prime
CAGTCGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGGAGCTTAAC
CAAGCGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGACTCATTGGA
GACCTTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAAGAAATTTG
GCGGACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGCAGAAGAAA
GTGATGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAGGTCATCGA
GGGGGCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGATACCTCGGC
CGCCAGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAACGAGGGTA
ATTTTCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAAGACGCCAC
CATTAGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAGCCTGAAGG
GACACACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGGGCAAGCTT
TTGGCCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGATTTCCAGCA
GAGCTACGAGTGTATCAAAACTATGCATGGTCACGATCACAATGTCTCGT
CGGTGGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCATCCCGGGAC
CGCACTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTGAAAACCTA
CACAGGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACATCGAAAGCA
GCATCTTTGCCACATGCTCAAATGATCAGACAATACGTGTTTGGTTGACG
AATTCAAAAGACTGCAAGGTTGAATTACGCGATCATGAGCATACTGTGGA
GTGCATTGCCTGGGCGCCGGAAGCCGCAGCCTCTGCGATAAACGAGCAGC
CGAGCAGACACAGAAGGCCATCACCAGGGCTCGTTCCTGGCCTCCGGCTC
CTCGCGACAAACCATTCGCATTTGGGACGTGAGCGTCGCTGGTGCCTGCT
TACCCTGAATACATGACATGGGTGGCGGGCCTGCATTCCATCCTGGTGGC
AAATACTGGTGTCGCACGATGAACAGAACATTCGGGTTGGACTGGCCCAC
AACGCGAGACATAGAGACGCTTACGCCTACCGATTCTCGCACACTCTAAG
ATTCCAGCACTCGATCGATAGCGTATGCGTATCACATTAGGCTTCGAGTT
CTGTGACAGACTCTCTTGAAAC
FMO01254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lis-1-RG | 1675 | CG8440-RG | 125..1218 | 9..1087 | 4900 | 97.4 | Plus |
| Lis-1-RF | 3292 | CG8440-RF | 630..1723 | 9..1087 | 4900 | 97.4 | Plus |
| Lis-1-RB | 2775 | CG8440-RB | 113..1206 | 9..1087 | 4900 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16182158..16182462 | 47..351 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 16182736..16182914 | 504..682 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 16182516..16182673 | 347..504 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16182982..16183120 | 682..820 | 680 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16183184..16183435 | 817..1057 | 585 | 91.3 | Plus |
| 2R | 25286936 | 2R | 16182053..16182090 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:51 has no hits.
FMO01254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:41 Download gff for
FMO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8440-RB | 109..1193 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:26 Download gff for
FMO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..1193 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:24 Download gff for
FMO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lis-1-RB | 109..1193 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:24 Download gff for
FMO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16182983..16183118 | 683..818 | 99 | -> | Plus |
| 2R | 16182049..16182090 | 1..46 | 91 | -> | Plus |
| 2R | 16182158..16182458 | 47..347 | 100 | -> | Plus |
| 2R | 16182517..16182673 | 348..504 | 100 | -> | Plus |
| 2R | 16182737..16182914 | 505..682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:26 Download gff for
FMO01254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12069554..12069595 | 1..46 | 91 | -> | Plus |
| arm_2R | 12069663..12069963 | 47..347 | 100 | -> | Plus |
| arm_2R | 12070022..12070178 | 348..504 | 100 | -> | Plus |
| arm_2R | 12070242..12070419 | 505..682 | 100 | -> | Plus |
| arm_2R | 12070488..12070623 | 683..818 | 99 | -> | Plus |
