FMO01256.5prime Sequence
1216 bp (1007 high quality bases) assembled on 2008-03-12
> FMO01256.5prime
CAGTCGACATGCCGATTCAGGCTCCCTCATGGACAGATTTTCTGAACTGT
CCCATCTGCTGCAATGAATTCGCGGCCAGCCAGCGATGTCCGGTCAGTCT
GGGCTGCGGGCACACCATCTGCAAGCTATGCCTGACGACCCTCTACAACC
GGCAGTGTCCCTTCGATCAGACCGTGATTGTCAGTGACATCGACAATTTG
CCCATCAACCATGCCTTGCTCCAGTTGGTCAAGGACTCGGAGCTCCTCGA
GCTGGCACCACCACCGCCCAGTGTGCAGAAGCTGGAGCCGGAGCACCTTA
AGTGTTACCAACTGGGTCAGCGGTGCATCGAGGAGCTGGCTTTGCACTTG
AAGTCCTTCCTCAACCTGAACGGAAATGGCAATCTTCTAACTCGACCCAT
GTTACGGAAACTGGTTACTCTGGTCAACTGCCAGCTGATGGAGGAGGAGG
GACGGGTGAGAGCGCTTCGAGCAGCCAGATCCCTAGGCGAACGCACAGTC
ACCGAGCTGATCCTGCAGCACCAAAATCCCCAGCAGTTGAGCTCAAATCT
GTGGGCTGCAGTGCGGACAAGAGGATGCCAGTTCCTTGGACCCGCCATGC
AGGAGGAGGTGCTCAAACTGGTGCTGCTGGCCTTGGAGGAGGGATCAGCG
CTTTCGCGCAAAGTGCTGGTCATGTTCGTCGTGCAGCGACTAGAGCCGAA
GTTTCCCCAGGCCTCCAAGACGAGTATCGGACATGTGGTACAGCTGCTCT
ACCGCGCCAGCTGCTTCAAGGTGTCCAAGCGGGAGGCGGACTCGTCGTTG
ATGCAGCTCAAAGAGGAATTCCGTACGTATGACGCTCTACGCCGGGAGCA
CGATGCCCAAATCGTTCAGATAGCCACCGAGGCGGGTCTGCGATTGCACC
GGAACAATGGTCTTCCCTATTGTATGGCGACGTGATGCATAAAGCACATG
CAGAGCATCATCGATAAGCTGCAGACGCCAGCTCCTTTGCGCAATCAGTC
AGGAATTGTCATCGCCTTGCAGCGGACAGCGATCTGCGAGCTATTCAGTT
GCATCATCATCTGGAAGTACTTGGCAATATTGATTCCTGTGCGGAGTGCC
GGGTCGTTGGGCGAGAGCTGGAAGACGAGTGCGCCATCGCGCGTGGACAT
GTGAATTCTCCTCCACACGAGTGCAAGGGCAGAACGGATCATTGCGGTCA
ATGTGACCTCCATACA
FMO01256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..1234 | 8..1096 | 5140 | 98.5 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..1234 | 8..1096 | 5140 | 98.5 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..1234 | 8..1096 | 5140 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16376075..16377014 | 1096..167 | 4070 | 97.8 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 170..8 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:37 has no hits.
FMO01256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:45 Download gff for
FMO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-RA | 220..1328 | 8..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:49 Download gff for
FMO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1328 | 8..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:44 Download gff for
FMO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 136..1244 | 8..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:44 Download gff for
FMO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16376065..16377010 | 171..1104 | 97 | <- | Minus |
| 3L | 16377076..16377241 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:49 Download gff for
FMO01256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16369165..16370110 | 171..1104 | 97 | <- | Minus |
| arm_3L | 16370176..16370341 | 1..170 | 97 | | Minus |
