FMO01257.5prime Sequence
1205 bp (979 high quality bases) assembled on 2008-03-12
> FMO01257.5prime
AGAAAACAAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCG
ACGAGGGTGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGA
GTTATCCTTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTC
GTAGCAAACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAG
GAACTCCGCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAA
TCGCAAACTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAA
ATCTGCAACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAA
ATCTATCAGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGG
CCTGAAGGAAACCAAGGAGATCAATTTCATGGAATTCTTCTCCGACTTCA
TCCTGGAACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCT
GATATGACGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCT
GGGAGTGGCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGC
GTCGCTTCTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTAC
GACTCGCTCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAA
AGCCTGCACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTC
GACACGATCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTT
TTACGGGCCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGC
ACCATCGATGGACCTGAAGCCACAGGTCCTGACGTGCTCGTTTCCCTGAT
GCTTTCCCAGGCACGAGAATGCTCTTTGAGAAGCTTCAGCTGCAGATCGA
GGCGATGAGCCACGATTGCCAGCGTTTCGGGATCTGGCTGGCGAGCTGCT
CAATTATCGCACGAGTACATGAGATGCACAGAATATCAGCGAACGATAGC
ACACCTTTTCTTCGAATGCTGGCGTCTAGTGCCCGTCAAGGCGGACTCTA
CAAGCATTCGCACATTCTCACAGCACGGAGCAGATGGCCACGACGAGCTG
AAGGTTAAGTCAGTCAGAACCAGGAATCTCTATCGGCATCCCAGAAGAGT
GATGG
FMO01257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rhp-RA | 2381 | CG8497-RA | 104..1254 | 23..1154 | 5100 | 97.3 | Plus |
| Rhp-RB | 2536 | CG8497-RB | 259..1409 | 23..1154 | 5100 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15791460..15791902 | 520..960 | 2115 | 99.5 | Plus |
| X | 23542271 | X | 15791241..15791397 | 366..522 | 755 | 98.7 | Plus |
| X | 23542271 | X | 15790977..15791106 | 238..367 | 650 | 100 | Plus |
| X | 23542271 | X | 15790742..15790860 | 122..240 | 595 | 100 | Plus |
| X | 23542271 | X | 15790289..15790389 | 23..123 | 505 | 100 | Plus |
| X | 23542271 | X | 15791988..15792060 | 961..1030 | 200 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:02 has no hits.
FMO01257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:46 Download gff for
FMO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8497-RA | 108..1263 | 23..1162 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:57 Download gff for
FMO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1414 | 23..1162 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:04 Download gff for
FMO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1414 | 23..1162 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:04 Download gff for
FMO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15790286..15790388 | 21..122 | 98 | -> | Plus |
| X | 15790743..15790859 | 123..239 | 100 | -> | Plus |
| X | 15790979..15791106 | 240..367 | 100 | -> | Plus |
| X | 15791243..15791396 | 368..521 | 98 | -> | Plus |
| X | 15791462..15791902 | 522..960 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:57 Download gff for
FMO01257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15684776..15684892 | 123..239 | 100 | -> | Plus |
| arm_X | 15685012..15685139 | 240..367 | 100 | -> | Plus |
| arm_X | 15685276..15685429 | 368..521 | 98 | -> | Plus |
| arm_X | 15684319..15684421 | 21..122 | 98 | -> | Plus |
| arm_X | 15685495..15685935 | 522..960 | 99 | -> | Plus |
