FMO01260.5prime Sequence
737 bp (737 high quality bases) assembled on 2008-03-12
> FMO01260.5prime
ATAATACGAAGTTATCAGTCGACATGGCGCTGGTGGATCACGATTCCTGG
GACATCGAGTACGAGGGCTGCGAGCGACTGCGGCATCAGCTGCTGGTATA
CCTCAACCAGCGGCAGCAGCTCAATCCGAGGACGAGCCAGTTCGTCCAAC
TGACAAGCAGCATTCAGACGGGAATAGAGCAGCTGGCCAAGGACATGAAG
CACCTCAAGGTGGTGCTGGACAACGCCATCACCTGGGAGACGAGCCCGGA
GGAGGAGCTGCAACAGCGGCGCATCGACTGGGATAGACTTACTTCGCAGC
TGCGCGAGATCCGCGAGAAGTTCGCAAACAGTAGCCGCTCCAATGTCCCG
GCCGCATCCGGTTCTGCTTGGCAGGATCAGGATCTCGGCCCAGGTCACAG
CAATTCCTCGCGGAATACCGCCTTGGATGTGGAGGCTCTGAAGCAGAAAA
AGACCGAGATGCTGGCGCAGCAGAACGAAGGACTCGAGGTTCTATCAGCC
ACATTGTCCAGACAGCGCCAACTGGCCACACAGCTGGGCAACGAGGTGGA
GGACCAGAACAATATCCTTGACAACTTGGCCAATGCCATGGACCGTGTGG
AAACGGGTGTGCAGCGGGAAACACAGAGCATTGGACAGGTTAACCGGCGG
GACAGTACCTGGGGCTACTGGCTCGTCATCATAGCCTTGTTCGTCGCCAT
CATTGTCGTGGTCTTCGTCGCAAGCTTTCTAGACCAT
FMO01260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx8-RA | 897 | CG4109-RA | 80..775 | 24..719 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16586441..16586978 | 561..24 | 2690 | 100 | Minus |
| 3L | 28110227 | 3L | 16586230..16586387 | 719..562 | 790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS4 | 754 | BS4 BS4 754bp | 91..126 | 194..156 | 107 | 79.5 | Minus |
FMO01260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:33 Download gff for
FMO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4109-RA | 115..820 | 16..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:02 Download gff for
FMO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 16..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:50 Download gff for
FMO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx8-RA | 73..780 | 16..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:50 Download gff for
FMO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16586225..16586387 | 562..726 | 98 | <- | Minus |
| 3L | 16586441..16586985 | 16..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:02 Download gff for
FMO01260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16579325..16579487 | 562..726 | 98 | <- | Minus |
| arm_3L | 16579541..16580085 | 16..561 | 99 | | Minus |
