FMO01261.5prime Sequence
1157 bp (953 high quality bases) assembled on 2008-03-12
> FMO01261.5prime
AAAAGGCCAAGTTATCAGTCGACATGTATGATCTCGACATGGAGACCTCC
TTTAATTCGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAA
CGATATCGATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCG
TGTTTGTGCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGC
GTTAAGATGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATCGT
GGTGTACTGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGA
CCATATTCTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAG
TTTGTGAAACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGCTT
GAACTACATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTTTA
AGGTCATCAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATG
ATATCGAAAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTGGC
CATCTGGGGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGCTA
AAAAGGTCATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACCAA
TTCGCGGACAAAAAGGTCACCCTTTGTCGATTCCCGCTCCCATGGTGCTC
AAGGGAGACCAACATCAACAAGATGCACACTCCCATCCGAGGGCATGTTG
CACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGC
CACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCC
AAACCACATCGCCAGAAAAGTTCCGTGTGCGACCACGTTGCGGCATCATC
CAGCCCAATCAGGAAGGCCACATCAACATAATGGGTGAAGTCGAACACAG
CTTAGTGACGACAGCAAGGATAGTTCCTGGTGATGCTATGGTCGCGCCAG
CGGTGATGCGTGGCGCGATGTGACCAACCTGTGCCGACCAATCCCTCTCA
TTCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTCGATGGAAACAA
ATCAAAAGGCGCAGACTAAATTGCCAGCAAGTCCAGTAGGCCACACCGTG
GAAATGC
FMO01261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RF | 2574 | CG33523-RF | 403..1528 | 24..1143 | 4880 | 96.7 | Plus |
| Vap-33B-RD | 2574 | CG33523-RD | 403..1528 | 24..1143 | 4880 | 96.7 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 403..1044 | 24..665 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5924905..5925322 | 24..441 | 2090 | 100 | Plus |
| 3L | 28110227 | 3L | 5925400..5925626 | 441..667 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 742..846 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928702..5928974 | 845..1108 | 505 | 89.1 | Plus |
| 3L | 28110227 | 3L | 5928228..5928288 | 671..733 | 215 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:03 has no hits.
FMO01261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:52 Download gff for
FMO01261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 203..1185 | 15..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:42 Download gff for
FMO01261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 205..1187 | 15..1000 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:00 Download gff for
FMO01261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RD | 396..1378 | 15..1000 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:00 Download gff for
FMO01261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5924898..5925322 | 15..441 | 99 | -> | Plus |
| 3L | 5925401..5925624 | 442..665 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 666..742 | 94 | -> | Plus |
| 3L | 5928537..5928640 | 743..846 | 100 | -> | Plus |
| 3L | 5928704..5928860 | 847..1000 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:42 Download gff for
FMO01261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5917998..5918422 | 15..441 | 99 | -> | Plus |
| arm_3L | 5918501..5918724 | 442..665 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 666..742 | 94 | -> | Plus |
| arm_3L | 5921637..5921740 | 743..846 | 100 | -> | Plus |
| arm_3L | 5921804..5921960 | 847..1000 | 93 | == | Plus |
