FMO01263.5prime Sequence
1010 bp (1010 high quality bases) assembled on 2008-03-12
> FMO01263.5prime
CAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGGACGAGGTA
TTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGGCGGGAGCT
GGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGAGCTGCGTA
ACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATC
AGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACT
CTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGTCAAGCAGA
TGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACATCACCGCA
CACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCACAATCATTC
CATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCATCAGCATC
CACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCAACTCGCTG
ATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACCATGTCGGC
GGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTCCAAGCTGG
AGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATCACGGCGGC
ATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCCATACAGCA
GCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAGCGATTCGA
TTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGCTCGATGAG
CACGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACCACGGAGTC
CAAGTTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCACATGAATA
ATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGACTGTATTGT
TTGTGATAATTTTGGTTTATTATTTTGGCAAGCTTTCTAAAACCATTCGT
TTGGCGGCGC
FMO01263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx6-RD | 1982 | CG7736-RD | 390..1359 | 8..977 | 4790 | 99.7 | Plus |
| Syx6-RB | 1361 | CG7736-RB | 175..1108 | 44..977 | 4610 | 99.7 | Plus |
| Syx6-RE | 1945 | CG7736-RE | 531..1464 | 44..977 | 4610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11220928..11221629 | 202..903 | 3495 | 99.9 | Plus |
| 2R | 25286936 | 2R | 11220464..11220621 | 44..201 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 11221783..11221857 | 903..977 | 280 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:47 has no hits.
FMO01263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:54 Download gff for
FMO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7736-RD | 383..1368 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:48 Download gff for
FMO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 385..1370 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:28 Download gff for
FMO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 385..1370 | 1..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:28 Download gff for
FMO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11220318..11220358 | 1..43 | 93 | -> | Plus |
| 2R | 11220464..11220621 | 44..201 | 100 | -> | Plus |
| 2R | 11220928..11221629 | 202..903 | 99 | -> | Plus |
| 2R | 11221784..11221868 | 904..987 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:48 Download gff for
FMO01263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7107823..7107863 | 1..43 | 93 | -> | Plus |
| arm_2R | 7107969..7108126 | 44..201 | 100 | -> | Plus |
| arm_2R | 7108433..7109134 | 202..903 | 99 | -> | Plus |
| arm_2R | 7109289..7109373 | 904..987 | 93 | | Plus |
