Clone FMO01264 Report

Search the DGRC for FMO01264

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:64
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01264.5prime Sequence

1219 bp (243 high quality bases) assembled on 2008-03-12

> FMO01264.5prime
ATTAAACGAAGTTATCAATCCACATGCTGGCTGTGAGATTGGCCAATTTG
CCATGCGTTAAATGCCTTCTGGCGGCCAAATGCAATGCGACCTATGAGTA
CGAAGGCTGGTCGATTGTCCAGGAAGCGGTCTGCACCGGCGATGTGGACA
TACTGACGGCCATCATCGAAGTCCGGGATCTCCAGCGTCATGTCCAGCGG
GTTACGCATGTGCCTAAGCTGCTGCAGCACCTATTGGACGCACCAGATTT
CTACATCGAGATGAAGTGGGAATTCACCTCCTGGGTGCCTCTGATGTCGC
GTCTCTGTCCCACCGACACCTACAAGGTCTACAAACGGGGAGCCAACGTC
AGGATAGATACCACCCTGCTGGGCTTCGACAACAACACCTGGCAACGGGG
CAATCGCTCTTACATCTTCTAGGGGGCCAAAAAAACTGCCACGATGATCG
AGATCGATCACGATACAAACGAAGTAATGGTGGAGGAGATGAGCAGCGAT
ATCGGTGATATTGTGGCCATTCCACCAGCCTTGGGCACCGTGAGGGCGCG
CCTCAAGCCCCGGTGATCACGAACAACATCGAGATGGACAAAATTAGCTT
CGAGCGCAACAAGTGCGGCATATGGGGATGGCGTAGCGAGAAATCTGAGA
TGATCAACGGCTACAACTGCTAGGTGTATGGGGCCAGCAACGTGGAGTTT
GTTACAAACACGCGAATGGATCACCTTAGCGAGGAGCAAATTAAGAACAA
GACAGCGAGGACTCCACTGCATATCCTGCTGGGAATTGCTGATGAGGATT
ATGTGTCACCCGCTGATGCTGCTGCGGCACTAAAGATCGTACACCATCGT
CCCGGGTGGAGGAAGCTTCCAACGCTGGAGTTGAAATGGTGGCTGACACT
CACCAGTCCTGGAAATCAAAGCAACTGAAGCTCCGCAGGAGCGTCAGGAA
ACAGTACTCCAAAGTCTTCAGTACTCCGGAGAGTATTTACTCAAGAGTTT
GATCTTCACGGAGGATGCTGGCGGTCCTTAATCTGATTCCTAAGTGTGAC
GGCTTTAAAGCACTTAGGTAGCGAGGAATCCATTCATGAGGACGGTGCTT
CCCTCTGGATCTCATGTTCACAATGACGGTCACTGAGTTCTAACTGTAGT
GAGCTTGACATGCACGTCTGTCGGTGCGGACAAATGGCAATCTACCTCCT
AGGTTGTAAGTGTGCGGGT

FMO01264.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-RE 2823 CG15118-RE 262..1274 24..1027 4505 96.8 Plus
CG15118-RD 2345 CG15118-RD 79..1091 24..1027 4505 96.8 Plus
CG15118-RB 2528 CG15118-RB 262..1274 24..1027 4505 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19136323..19136637 429..115 1515 98.7 Minus
2R 25286936 2R 19135939..19136252 745..433 1475 98.7 Minus
2R 25286936 2R 19136695..19136785 114..24 455 100 Minus
2R 25286936 2R 19135432..19135625 1027..841 445 89.2 Minus
2R 25286936 2R 19135692..19135786 834..740 445 97.9 Minus
Blast to na_te.dros performed on 2014-11-28 22:16:11 has no hits.

FMO01264.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:56 Download gff for FMO01264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15118-RC 370..1371 20..1012 96 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:49 Download gff for FMO01264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 256..1257 20..1012 96 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:40 Download gff for FMO01264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 256..1257 20..1012 96 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:40 Download gff for FMO01264.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19135939..19136255 430..745 98 <- Minus
2R 19135685..19135780 746..840 97 <- Minus
2R 19136323..19136637 115..429 98 <- Minus
2R 19136695..19136791 20..114 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:49 Download gff for FMO01264.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15023190..15023285 746..840 97 <- Minus
arm_2R 15023444..15023760 430..745 98 <- Minus
arm_2R 15023828..15024142 115..429 98 <- Minus
arm_2R 15024200..15024296 20..114 97   Minus