FMO01268.5prime Sequence
740 bp (740 high quality bases) assembled on 2008-03-12
> FMO01268.5prime
AAAAACCAAGTTATCAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCG
CTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCCATCC
GAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATTCCAA
GAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCAGTGA
CGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGT
TGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGTTGAA
GTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGG
CTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTG
TGGCGGAGCAAATCCCCCACATCTGCGGATGTGGTGCAGCATCGACTGGT
CTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCA
AGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTA
GATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCA
ATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTC
TGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACG
GCGTATTCGTGCGCTAAGCGCAAGCAGCTTTCTAGACCAT
FMO01268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RA | 1508 | CG33523-RA | 188..888 | 23..723 | 3490 | 99.9 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 1141..1834 | 30..723 | 3455 | 99.9 | Plus |
| Vap-33B-RF | 2574 | CG33523-RF | 1044..1736 | 31..723 | 3450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5928702..5929040 | 207..545 | 1680 | 99.7 | Plus |
| 3L | 28110227 | 3L | 5929104..5929282 | 545..723 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 104..208 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928223..5928297 | 31..105 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:48 has no hits.
FMO01268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:02 Download gff for
FMO01268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RA | 181..888 | 15..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:27 Download gff for
FMO01268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RA | 181..888 | 15..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:11 Download gff for
FMO01268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RA | 181..888 | 15..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:11 Download gff for
FMO01268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5929104..5929282 | 545..723 | 100 | | Plus |
| 3L | 5928537..5928640 | 105..208 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 209..544 | 99 | -> | Plus |
| 3L | 5928221..5928296 | 28..104 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:27 Download gff for
FMO01268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5921321..5921396 | 28..104 | 98 | -> | Plus |
| arm_3L | 5921637..5921740 | 105..208 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 209..544 | 99 | -> | Plus |
| arm_3L | 5922204..5922382 | 545..723 | 100 | | Plus |
