FMO01269.5prime Sequence
1175 bp (977 high quality bases) assembled on 2008-03-12
> FMO01269.5prime
AAAAAACCAAGTTATCAGTCGACATGGGCAAGGAAAAGATTCACATTAAC
ATTGTCGTGATCGGACACGTCGATTCCGGTAAGTCGACCACCACCGGACA
CTTGATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCG
AGAAGGAGGCCCAGGAGATGGGAAAGGGATCCTTCAAGTACGCCTGGGTT
TTGGATAAGTTGAAGGCTGAGCGCGAGCGTGGTATCACCATCGATATCGC
CCTGTGGAAGTTCGAAACTGCCAAGTACTACGTGACCATCATTGATGCCC
CCGGACACAGGGATTTCATCAAGAACATGATCACTGGTACCTCGCAGGCC
GATTGCGCCGTGCTGATTGTCGCCGCCGGAACCGGAGAATTCGAGGCAGG
TATCTCGAAGAACGGCCAGACCCGCGAGCACGTCCTGCTCGCCTTCACCC
TGGGTGTGAAGCAGCTGATCGTTGGTGTGAACAAGATGGACTCCTCCGAG
CCACCATACAGCGAGGCCCGTTATGAGGAAATCAAGAAGGAAGTGTCCTC
TTACATCAAGAAGATCGGCTACAACCCAGCCGCCGTTGCCTTCGTGCCCA
TTTCCGGATGGCACGGCGACAACATGTTGGAACCCTCTACCAACATGCCC
TGGTTCAAGGGATGGAAGGTGGAGCGCAAGGAGGGTAACGCTGACGGCAA
GACCCTGATCGATGCCCTCGATGCCATCCTTCCCCCAGCCCGTCCCACCG
ACAAGGCCCTGCGTCTGCCCCTGCATGATGTGTACAAAATTGGCGGTATT
GGAACAGTACCCGTGGGTCGTGTGAGACTGGTGTGCTGAAGCCCGGTACC
GTTGTGGTCTTCGCCCTGCTAACATCACCACTGAGGTCAAGTCCGTGGAG
ATGCACACGAGCCCTGCAGGAGGCCGTTCACGGAGACACGTTGGCTTCAA
CGTCAAGAACGTGTCGTGAGGACTGCGTCGTGCTACGTGCCGGTGACTCA
AGCTAACTCTCCTAAGGGAGCGCGACTTCCCGCCAGGTCATCGTGTCTGA
ACCACCGGTCGATGCCACGCCTACACCCCAGGGTGGAATGCACACCGCCA
CATGCCTGCAAGTCGCTGAAATCAGAAGTCCACCGCTTTCGGAGACCCCG
AGGAAACTCCAAGATATCAGTCTGC
FMO01269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..1216 | 22..1124 | 4800 | 96.5 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..1256 | 22..1124 | 4800 | 96.5 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..1159 | 22..1124 | 4800 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894521 | 22..965 | 4450 | 99.2 | Plus |
| 3R | 32079331 | 3R | 31740347..31741172 | 24..848 | 2190 | 84.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:00 has no hits.
FMO01269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:36 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:52 Download gff for
FMO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 71..1146 | 11..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:01 Download gff for
FMO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 21..1096 | 11..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:01 Download gff for
FMO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893561..11894637 | 11..1067 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:52 Download gff for
FMO01269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781066..7782142 | 11..1067 | 97 | | Plus |
