FMO01270.5prime Sequence
746 bp (746 high quality bases) assembled on 2008-03-12
> FMO01270.5prime
CAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCTTTGTCGAT
TCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCC
ATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATT
CCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCA
GTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACC
ACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGT
TGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTG
ATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGA
GCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGAC
TGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCA
AGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGG
CGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCACCCAGAACC
TGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGC
TTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGGC
AACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGACCAT
FMO01270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 9..728 | 3600 | 100 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 36..728 | 3465 | 100 | Plus |
| Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 36..728 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5928702..5929040 | 211..549 | 1695 | 100 | Plus |
| 3L | 28110227 | 3L | 5929104..5929283 | 549..728 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 108..212 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928224..5928297 | 36..109 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:35 has no hits.
FMO01270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:44:48 Download gff for
FMO01270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RC | 100..827 | 9..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:29 Download gff for
FMO01270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RC | 100..827 | 9..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:28 Download gff for
FMO01270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RC | 100..827 | 9..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:28 Download gff for
FMO01270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5927881..5927907 | 9..35 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 36..108 | 100 | -> | Plus |
| 3L | 5928537..5928640 | 109..212 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 213..548 | 100 | -> | Plus |
| 3L | 5929104..5929291 | 549..737 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:29 Download gff for
FMO01270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5920981..5921007 | 9..35 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 36..108 | 100 | -> | Plus |
| arm_3L | 5921637..5921740 | 109..212 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 213..548 | 100 | -> | Plus |
| arm_3L | 5922204..5922391 | 549..737 | 97 | | Plus |
