Clone FMO01272 Report

Search the DGRC for FMO01272

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01272.5prime Sequence

1127 bp (995 high quality bases) assembled on 2008-03-12

> FMO01272.5prime
ATAATACGAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTT
ACCAACAGAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGC
CGCCTCCACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCT
CTGGATCCTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCC
AGCAGCTCGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGA
AGAGCCGGTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGT
TCGAATGGGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGC
GGCTACTTCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACC
GCCATCCATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGA
ACGGTGATCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAG
AGTGGCGAGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCAC
CATCCTGCTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGC
CGGCCAACGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAG
GGTAAGGACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGC
CAATGCCGAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGG
ACTACTGCCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGAT
GCCAACTTCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCC
ATCTGATGATGACTTCGATGAGACGACGACGATGATGAGGACGAGGATGA
GATGAGGACGTGCCACGGCGCCGATTAGCAAAAATAATGGAGGCAGCAGC
AGGTGCAAGGACAACGGGCTGGTCAGAAGAGGCGGCCGCCGCCGGAGCGG
ACGATGCCGAATCCGCCTGATGAACGCGGCAAGGGCGAGACCACAGCAAG
CTTTCTAAGACCATTTCGTTTGGGCGCGCCGGGCCCAGGTAAGTGGTCTA
ATCCTAAATCACTAAATCTCATAATCA

FMO01272.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RD 1410 CG7656-RD 234..1259 21..1045 4955 99.1 Plus
CG7656-RF 2027 CG7656-RF 234..1253 21..1045 4855 98.5 Plus
CG7656-RE 1234 CG7656-RE 118..1109 55..1045 4770 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587634 651..21 3155 100 Minus
3L 28110227 3L 15586205..15586603 1045..648 1695 97.8 Minus
Blast to na_te.dros performed on 2014-11-28 22:26:29 has no hits.

FMO01272.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:44 Download gff for FMO01272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 27..1060 14..1049 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:00 Download gff for FMO01272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..1262 14..1049 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:13 Download gff for FMO01272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..1262 14..1049 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:13 Download gff for FMO01272.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15586202..15586600 651..1049 97 <- Minus
3L 15587005..15587631 24..650 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:00 Download gff for FMO01272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579302..15579700 651..1049 97 <- Minus
arm_3L 15580105..15580731 24..650 100 -> Minus