Clone FMO01279 Report

Search the DGRC for FMO01279

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17048-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01279.5prime Sequence

398 bp (398 high quality bases) assembled on 2008-03-12

> FMO01279.5prime
CAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTGGTCTGCGG
AGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTCGATACGAT
TAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGATCGCATAC
AGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAAGCTGTTTA
GCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGCCCAATCTG
TCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTTCCACGATA
ACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGCTCAGTCTG
GGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTAGACCAT

FMO01279.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..538 9..380 1860 100 Plus
CG17048-RA 592 CG17048-RA 167..538 9..380 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 299..9 1455 100 Minus
2R 25286936 2R 13353812..13353892 380..300 405 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:46:40 has no hits.

FMO01279.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:30 Download gff for FMO01279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 1..375 9..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:46 Download gff for FMO01279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 185..566 1..388 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:37 Download gff for FMO01279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 163..544 1..388 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:37 Download gff for FMO01279.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13353806..13353892 300..388 95 <- Minus
2R 13354043..13354337 1..299 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:46 Download gff for FMO01279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241311..9241397 300..388 95 <- Minus
arm_2R 9241548..9241842 1..299 98   Minus