FMO01284.5prime Sequence
1109 bp (949 high quality bases) assembled on 2008-03-12
> FMO01284.5prime
ATAGGAAACAATTATCAGTCGACATGCAGAAGCGTAAACGTTGCTTCCTA
AAAAAAGGGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGC
CAAAAAGGCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCA
AATGTAAATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTT
AAGAGCAATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAA
GAACAAAATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTG
GCTCATCGGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGA
TTGATTCGCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTAT
ATTGAGTTTGGGGAATCTCTTGCACTTTGCTCTTAACCTCCGTGACTATA
TCATAAGACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAA
AGCACTTGCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACT
GTGCATAAGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTC
AGGCATTGAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGAC
GCACTTATGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAAT
GTTACTTGATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATC
CGAACGTTACGGTTCAGAACGCCGCACTGCAGCCCTAATAAATATAGCAA
CTGGATCCGAAGAGCAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCC
CATTTATCGGCTCTGATGTCCAATAGTGATCCAGATATTCGCTGTAAGTT
CTTAAGCTTTTGCTAAACATCGCTGACGGAATATATTCCAAAGGCACGCC
ATTATGAATGCAGTTCTCCTGCATAAAATACTGAGTGCTTAAAGCTGATG
CGATTCCTTAAATCTGCAGCTGCTGACAATCACCACGTTGGCCATCGATA
AGGAAAAGAATTTCCTGGTGTCTTATCTTAGGAGAACAGGAAGTATTCCA
GAGTTCTGC
FMO01284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..1162 | 24..1109 | 4990 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009832..6010584 | 1067..324 | 3280 | 97.9 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 323..24 | 1470 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:46 has no hits.
FMO01284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:22 Download gff for
FMO01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1092 | 24..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:59 Download gff for
FMO01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1162 | 24..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:42 Download gff for
FMO01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1162 | 24..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:42 Download gff for
FMO01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009793..6010584 | 324..1109 | 97 | <- | Minus |
| 3L | 6010652..6010951 | 24..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:59 Download gff for
FMO01284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002893..6003684 | 324..1109 | 97 | <- | Minus |
| arm_3L | 6003752..6004051 | 24..323 | 99 | | Minus |
