FMO01286.5prime Sequence
1126 bp (585 high quality bases) assembled on 2008-03-12
> FMO01286.5prime
AAAAACCTAACTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGG
GCGGGCGGTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAAT
AAGGCTGATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGG
GTGAAATTGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATT
TCGGATGGCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAA
TGCAATCTTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGT
GCTCGCAGTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATT
CGATTGATTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGG
TTCAAAGATCAAGGAAATTCGTCAGACCACTGGCTGCTCCATCCAAGTGG
CCAGTGAAATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGC
AGCGCCGAGCAGATCACCTAGTGCATCTATCAGATATGTCTTGTCATGTT
GGAGTCCCCGCCACGCGGTGCCACCATCCCCGTACCGACCAAAACCACAG
GTTACTGGCCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAAG
GAAAACTACGCGGTGCCCACACAAGAGGTGGCCAAGAAACCGCTGGCCAG
TCTGGGCCGCCTTGGGCCTGGCTGGGATGAATTCCGGCCACCCCTGGGGG
GATCAACCCACACTGCAGCCTTGGCTGCACTGGCCGGGGCCCAACTGCGT
ACAGCGATCCCGCGAAACGAGCCCAGCAGCACACCACAAGATGACCGGCT
CAACGACCCGATTGCTGCATCATCGGCAGGGAGGCACCCAAATCGCCAAA
TTCCCCAAATTTCGGCGCCTGATCGGATCTCTACTGGGGAGGAGCGCGAG
GGCGGCCATACGACCCCCCCATCCTCATCGCCGGAATCCGGATTCGAGGA
CCTGGCCCATACTTAATTAAAATGAGAAATACATGAAGAATTGCATGCTG
GCCAATACCTGGTTATTCCAATAGTTGCCGCCCAGGTGCAATTGTTTAAA
ACAGCCTTTCCACGCAAGCCTTTCAC
FMO01286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RC | 9374 | CG7437-RC | 841..1931 | 23..1110 | 4090 | 93.1 | Plus |
| mub-RD | 11975 | CG7437-RD | 841..1851 | 23..1026 | 4055 | 94.6 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..2002 | 23..1110 | 3990 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21915260..21915424 | 390..554 | 795 | 98.8 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 178..296 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 553..679 | 505 | 96.9 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 23..123 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 295..395 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 121..179 | 295 | 100 | Plus |
| 3L | 28110227 | 3L | 21921053..21921258 | 765..961 | 295 | 86.4 | Plus |
| 3L | 28110227 | 3L | 21920901..21920981 | 676..758 | 255 | 92.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:50 has no hits.
FMO01286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:35 Download gff for
FMO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7437-RC | 808..1869 | 23..1078 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:32 Download gff for
FMO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1902 | 23..1078 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:54 Download gff for
FMO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RC | 841..1902 | 23..1078 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:54 Download gff for
FMO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907821..21907920 | 23..122 | 99 | -> | Plus |
| 3L | 21914776..21914832 | 123..179 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 180..296 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 297..390 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 391..554 | 98 | -> | Plus |
| 3L | 21915536..21915655 | 555..677 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:32 Download gff for
FMO01286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 23..122 | 99 | -> | Plus |
| arm_3L | 21907876..21907932 | 123..179 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 180..296 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 297..390 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 391..554 | 98 | -> | Plus |
| arm_3L | 21908636..21908755 | 555..677 | 97 | -> | Plus |
