FMO01287.5prime Sequence
413 bp (413 high quality bases) assembled on 2008-03-12
> FMO01287.5prime
CAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGATCCAACAAC
AACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACCCAAGCCAA
GGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAAGGTCCTGG
AGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATCAGCTGGAG
CAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAGCGCAAGCA
ATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGATAGCCGTTG
TGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTAGTGACAGC
GGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCGCACGCAAG
CTTTCTAGACCAT
FMO01287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RE | 814 | CG12210-RE | 109..495 | 9..395 | 1920 | 99.7 | Plus |
| Syb-RA | 852 | CG12210-RA | 147..533 | 9..395 | 1920 | 99.7 | Plus |
| Syb-RC | 921 | CG12210-RC | 263..602 | 56..395 | 1685 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250879..10251144 | 321..56 | 1315 | 99.6 | Minus |
| 2R | 25286936 | 2R | 10249754..10249828 | 395..321 | 375 | 100 | Minus |
| 3L | 28110227 | 3L | 1635328..1635439 | 242..131 | 245 | 81.2 | Minus |
| 2R | 25286936 | 2R | 10251927..10251974 | 56..9 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:50 has no hits.
FMO01287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:37 Download gff for
FMO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12210-RA | 131..530 | 1..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:39 Download gff for
FMO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RA | 139..538 | 1..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:46 Download gff for
FMO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RA | 139..538 | 1..400 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:46 Download gff for
FMO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10249749..10249827 | 322..400 | 97 | <- | Minus |
| 2R | 10250879..10251144 | 56..321 | 99 | <- | Minus |
| 2R | 10251928..10251978 | 1..55 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:39 Download gff for
FMO01287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6137254..6137332 | 322..400 | 97 | <- | Minus |
| arm_2R | 6138384..6138649 | 56..321 | 99 | <- | Minus |
| arm_2R | 6139433..6139483 | 1..55 | 92 | | Minus |
