FMO01288.5prime Sequence
1150 bp (1001 high quality bases) assembled on 2008-03-12
> FMO01288.5prime
CAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCAAAACGCTA
GAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTCAATTCCAG
CGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAAGCGGTACG
ATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGCCAGTTTGG
TTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAAATACTTAG
CAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGGCATACTGC
TGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCGACATCGAT
AATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCCCCCCTTCG
CTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGGCGGACCCC
ACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGGATCCCATC
GGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCGCTGGAAAT
GGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGTGGAACACC
TAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACTATCTAAAA
GGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATGAAGGAATT
ACGCGACATTTATCGCTCAGACGCCTTCAAAAGAACATGTATTCTATTGA
GCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCAAGTCTGTCG
ACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAGGAGAAGGAG
GGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGACGTATCCCTT
CGAGCCGCATTTGTGCGCGTTGTCATCCGATTATCTCAGCGCTATGTGCT
CATCGTGGGTGCCATCTGCATGGAATTGCTGACAAACAGGCTGGAGCTCG
GCATATACCGTGGAAGCGGTATCATGCAATTGCACCCACTTCTCGTCAAG
GGAAAGCCGCATCATCCGGGCTACCAAGACTGACCCAGGGCAATACAGTT
GCTCAGCCAGCCAGACTTCTAATCTCTCTGGTGCAATTTCTCGAAAAAGA
FMO01288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 619..1775 | 9..1147 | 5065 | 97.1 | Plus |
| CG2924-RB | 2717 | CG2924-RB | 730..1886 | 9..1147 | 5065 | 97.1 | Plus |
| CG2924-RE | 2928 | CG2924-RE | 669..1825 | 9..1147 | 5065 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266820..2267110 | 575..285 | 1455 | 100 | Minus |
| X | 23542271 | X | 2266248..2266539 | 939..651 | 1310 | 99 | Minus |
| X | 23542271 | X | 2268937..2269099 | 171..9 | 815 | 100 | Minus |
| X | 23542271 | X | 2267174..2267294 | 290..170 | 605 | 100 | Minus |
| X | 23542271 | X | 2266596..2266673 | 651..574 | 390 | 100 | Minus |
| X | 23542271 | X | 2266059..2266181 | 1060..941 | 310 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:59 has no hits.
FMO01288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:47 Download gff for
FMO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 608..1736 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:34 Download gff for
FMO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 663..1791 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:17 Download gff for
FMO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 663..1791 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:17 Download gff for
FMO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2266248..2266539 | 651..939 | 98 | <- | Minus |
| X | 2266597..2266671 | 576..650 | 100 | <- | Minus |
| X | 2266820..2267107 | 288..575 | 100 | <- | Minus |
| X | 2267177..2267293 | 171..287 | 100 | <- | Minus |
| X | 2268938..2269105 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:34 Download gff for
FMO01288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2160853..2161140 | 288..575 | 100 | <- | Minus |
| arm_X | 2160281..2160572 | 651..939 | 98 | <- | Minus |
| arm_X | 2160630..2160704 | 576..650 | 100 | <- | Minus |
| arm_X | 2161210..2161326 | 171..287 | 100 | <- | Minus |
| arm_X | 2162971..2163138 | 1..170 | 97 | | Minus |
