Clone FMO01289 Report

Search the DGRC for FMO01289

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:89
Vector:pMK33-CFH-BD
Associated Gene/Transcriptpan-RI
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01289.5prime Sequence

1167 bp (918 high quality bases) assembled on 2008-03-12

> FMO01289.5prime
ATAAAAACAAATTATCAGTCGACATGCCTCATACACACAGAGGCATGGAT
CATCAGGAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAGAC
GAAGGAGATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTTGA
AGAAAAGTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACA
AAATTTCAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCCAC
GCCCCTAGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAA
TGGTTCTCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACTGC
CTCCGTTTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAGCG
CATTGCGGAATTCCTCCATATCAACTGGATCCTATTTTGGGCTTAACTCG
ACCAGCGCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCTAA
GTTCAGATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATTCT
GCATCTAGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACTAC
ACTTGCAAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTTACCTTCA
GTACATGCCACATCGCACCACGTTATAAAATGCTCATTCTGCTATTGTGG
GGGTTAGCTCTAAAACAAGAATGCGGGTGTTCAGGACCCAACAACGAATA
ATAGATATCCCAGGAACCTGGAAGCAAAGCACACATTCAAATGCGCAATC
AAATGAATCCAAGAGACACAAATGATAAAAAAAAACCCCATATTAAGAAG
CCACTAAATGCGTTCATGCTCTATATGAAGGAATGCGTGCTAAGTTGTTG
CTGAATGCACTCCGAAGGATCGGCTGCGATAATCAGATTAAAGAGACGGT
GCATGGCTTGGGGCGTGAGGAGCAGCCAGTTTTACCAGTTGCGCGAAGGA
CGACAACTGCACATGCAATGTTTCTTGATTGGAGCTCTCGTACAATGCTC
CTGCGCAAAAACGAAGCGGATGCAGATATCATGGATGGAGGCATAATGAA
AATGCCCGGCCGTTTCGAACTTAATAACGAGTTCAGGGGTGCACTCGGTG
CAGGGTGTTTTATCCCC

FMO01289.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
pan-RI 3795 CG34403-RI 697..1865 23..1166 4555 94.4 Plus
pan-RH 4219 CG34403-RH 697..1852 23..1154 4545 94.6 Plus
pan-RQ 4954 CG34403-RQ 697..1851 23..1153 4540 94.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 72429..72595 23..188 785 99.4 Plus
4 1348131 4 87015..87167 608..764 570 96.8 Plus
4 1348131 4 94421..94593 762..930 555 96 Plus
4 1348131 4 82637..82740 331..434 520 100 Plus
4 1348131 4 75068..75166 234..332 495 100 Plus
4 1348131 4 85711..85800 440..529 450 100 Plus
4 1348131 4 85852..85933 528..609 410 100 Plus
4 1348131 4 72815..72867 186..238 250 98.1 Plus
Blast to na_te.dros performed on 2014-11-28 19:27:01 has no hits.

FMO01289.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:33 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:11 Download gff for FMO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 697..1749 23..1061 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:14 Download gff for FMO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 697..1749 23..1061 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:14 Download gff for FMO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
4 72429..72594 23..187 99 -> Plus
4 72817..72862 188..233 100 -> Plus
4 75068..75165 234..331 100 -> Plus
4 82638..82746 332..440 97 -> Plus
4 85712..85799 441..528 100 -> Plus
4 85853..85933 529..609 100 -> Plus
4 87017..87166 610..763 96 -> Plus
4 94423..94615 764..949 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:11 Download gff for FMO01289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 93055..93220 23..187 99 -> Plus
arm_4 93443..93488 188..233 100 -> Plus
arm_4 95694..95791 234..331 100 -> Plus
arm_4 103264..103372 332..440 97 -> Plus
arm_4 106338..106425 441..528 100 -> Plus
arm_4 106479..106559 529..609 100 -> Plus
arm_4 107643..107792 610..763 96 -> Plus
arm_4 115049..115241 764..949 93 -> Plus