FMO01289.5prime Sequence
1167 bp (918 high quality bases) assembled on 2008-03-12
> FMO01289.5prime
ATAAAAACAAATTATCAGTCGACATGCCTCATACACACAGAGGCATGGAT
CATCAGGAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAGAC
GAAGGAGATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTTGA
AGAAAAGTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACA
AAATTTCAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCCAC
GCCCCTAGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAA
TGGTTCTCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACTGC
CTCCGTTTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAGCG
CATTGCGGAATTCCTCCATATCAACTGGATCCTATTTTGGGCTTAACTCG
ACCAGCGCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCTAA
GTTCAGATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATTCT
GCATCTAGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACTAC
ACTTGCAAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTTACCTTCA
GTACATGCCACATCGCACCACGTTATAAAATGCTCATTCTGCTATTGTGG
GGGTTAGCTCTAAAACAAGAATGCGGGTGTTCAGGACCCAACAACGAATA
ATAGATATCCCAGGAACCTGGAAGCAAAGCACACATTCAAATGCGCAATC
AAATGAATCCAAGAGACACAAATGATAAAAAAAAACCCCATATTAAGAAG
CCACTAAATGCGTTCATGCTCTATATGAAGGAATGCGTGCTAAGTTGTTG
CTGAATGCACTCCGAAGGATCGGCTGCGATAATCAGATTAAAGAGACGGT
GCATGGCTTGGGGCGTGAGGAGCAGCCAGTTTTACCAGTTGCGCGAAGGA
CGACAACTGCACATGCAATGTTTCTTGATTGGAGCTCTCGTACAATGCTC
CTGCGCAAAAACGAAGCGGATGCAGATATCATGGATGGAGGCATAATGAA
AATGCCCGGCCGTTTCGAACTTAATAACGAGTTCAGGGGTGCACTCGGTG
CAGGGTGTTTTATCCCC
FMO01289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pan-RI | 3795 | CG34403-RI | 697..1865 | 23..1166 | 4555 | 94.4 | Plus |
pan-RH | 4219 | CG34403-RH | 697..1852 | 23..1154 | 4545 | 94.6 | Plus |
pan-RQ | 4954 | CG34403-RQ | 697..1851 | 23..1153 | 4540 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 72429..72595 | 23..188 | 785 | 99.4 | Plus |
4 | 1348131 | 4 | 87015..87167 | 608..764 | 570 | 96.8 | Plus |
4 | 1348131 | 4 | 94421..94593 | 762..930 | 555 | 96 | Plus |
4 | 1348131 | 4 | 82637..82740 | 331..434 | 520 | 100 | Plus |
4 | 1348131 | 4 | 75068..75166 | 234..332 | 495 | 100 | Plus |
4 | 1348131 | 4 | 85711..85800 | 440..529 | 450 | 100 | Plus |
4 | 1348131 | 4 | 85852..85933 | 528..609 | 410 | 100 | Plus |
4 | 1348131 | 4 | 72815..72867 | 186..238 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:01 has no hits.
FMO01289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:33 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:11 Download gff for
FMO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pan-RI | 697..1749 | 23..1061 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:14 Download gff for
FMO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pan-RI | 697..1749 | 23..1061 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:14 Download gff for
FMO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 72429..72594 | 23..187 | 99 | -> | Plus |
4 | 72817..72862 | 188..233 | 100 | -> | Plus |
4 | 75068..75165 | 234..331 | 100 | -> | Plus |
4 | 82638..82746 | 332..440 | 97 | -> | Plus |
4 | 85712..85799 | 441..528 | 100 | -> | Plus |
4 | 85853..85933 | 529..609 | 100 | -> | Plus |
4 | 87017..87166 | 610..763 | 96 | -> | Plus |
4 | 94423..94615 | 764..949 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:11 Download gff for
FMO01289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 93055..93220 | 23..187 | 99 | -> | Plus |
arm_4 | 93443..93488 | 188..233 | 100 | -> | Plus |
arm_4 | 95694..95791 | 234..331 | 100 | -> | Plus |
arm_4 | 103264..103372 | 332..440 | 97 | -> | Plus |
arm_4 | 106338..106425 | 441..528 | 100 | -> | Plus |
arm_4 | 106479..106559 | 529..609 | 100 | -> | Plus |
arm_4 | 107643..107792 | 610..763 | 96 | -> | Plus |
arm_4 | 115049..115241 | 764..949 | 93 | -> | Plus |