Clone FMO01291 Report

Search the DGRC for FMO01291

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:91
Vector:pMK33-CFH-BD
Associated Gene/TranscriptElongin-B-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01291.5prime Sequence

395 bp (395 high quality bases) assembled on 2008-03-12

> FMO01291.5prime
TTTATACGAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGG
CAAAAGACCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGA
GCTGAAGCGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGC
GGTTATACAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAG
GACTACGGCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCT
GGGCTTGACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGA
CACCCTACTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAG
GCCTCGAACGGACAGGAGCAGGTGGCAGCAAGCTTTCTAGACCAT

FMO01291.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
EloB-RA 1207 CG4204-RA 395..748 24..377 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20578913..20579059 266..120 735 100 Minus
3R 32079331 3R 20578681..20578794 377..264 570 100 Minus
3R 32079331 3R 20579138..20579233 121..26 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:19:09 has no hits.

FMO01291.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:06 Download gff for FMO01291.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4204-RA 408..773 15..382 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:06 Download gff for FMO01291.5prime
Subject Subject Range Query Range Percent Splice Strand
Elongin-B-RA 387..752 15..382 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:57 Download gff for FMO01291.5prime
Subject Subject Range Query Range Percent Splice Strand
EloB-RA 387..752 15..382 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:57 Download gff for FMO01291.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20578677..20578792 266..382 98 <- Minus
3R 20578914..20579058 121..265 100 <- Minus
3R 20579139..20579242 15..120 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:06 Download gff for FMO01291.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16404399..16404514 266..382 98 <- Minus
arm_3R 16404636..16404780 121..265 100 <- Minus
arm_3R 16404861..16404964 15..120 95   Minus