Clone FMO01292 Report

Search the DGRC for FMO01292

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:92
Vector:pMK33-CFH-BD
Associated Gene/TranscriptendoB-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01292.5prime Sequence

1160 bp (999 high quality bases) assembled on 2008-03-12

> FMO01292.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGGCATCTCGC
CAGAGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGGCTCAGGCC
GAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGACGGGATCAG
CACATCGCAGGCATCTCATTTGCGCCACTTGCACGCCTTCATCCAGACGC
AAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGAGCAGCTGCAGCGT
GAACTGGCCAACTTGGGAGGCCCCACGCCATACATTCCGCTCGACGTGAA
CGAGGCCAGTGCCAGCAAGTCCACATATCGTCCGGAGCCGCAGCCCGTGT
CCTGGCAACAATCACTCTGCCAATATGGCTGCCACCGGCCACAGCCTAAT
CAGCCCATGCACGTCAGCACGGATCAGATGCAGAGGGCACGCGTCCTTTG
CTCCTACGACGCCAGATCCACCGAGCTAAATTTGAGCCCCAATGAAGGTG
ATCTTCGTGACGGATGCTCTCACAGTAACAAGAATAATTACGGAAACGGT
CTATGAAGGGCTCTGGGGCCCTCGCCATTTGTGTGATGGTTCCACGAAAG
AACCACGCAA

FMO01292.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
EndoB-RA 2226 CG9834-RA 114..1188 9..1078 5125 98.9 Plus
EndoB-RC 2190 CG9834-RC 114..916 9..811 4015 100 Plus
EndoB-RD 2154 CG9834-RD 114..689 9..584 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19309816..19310316 584..84 2505 100 Minus
2R 25286936 2R 19309393..19309585 811..619 965 100 Minus
2R 25286936 2R 19308574..19308813 1045..812 905 96.7 Minus
2R 25286936 2R 19310475..19310552 86..9 390 100 Minus
2R 25286936 2R 19309662..19309699 621..584 190 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:15:08 has no hits.

FMO01292.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:08 Download gff for FMO01292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9834-RA 141..1219 9..1083 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:26 Download gff for FMO01292.5prime
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 114..1192 9..1083 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:13 Download gff for FMO01292.5prime
Subject Subject Range Query Range Percent Splice Strand
EndoB-RA 114..1192 9..1083 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:13 Download gff for FMO01292.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19308573..19308813 812..1047 96 <- Minus
2R 19309393..19309583 621..811 100 <- Minus
2R 19309663..19309698 585..620 100 <- Minus
2R 19309816..19310313 87..584 100 <- Minus
2R 19310475..19310552 9..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:26 Download gff for FMO01292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15196078..15196318 812..1047 96 <- Minus
arm_2R 15196898..15197088 621..811 100 <- Minus
arm_2R 15197168..15197203 585..620 100 <- Minus
arm_2R 15197321..15197818 87..584 100 <- Minus
arm_2R 15197980..15198057 9..86 100   Minus