FMO01292.5prime Sequence
1160 bp (999 high quality bases) assembled on 2008-03-12
> FMO01292.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGGCATCTCGC
CAGAGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGGCTCAGGCC
GAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGACGGGATCAG
CACATCGCAGGCATCTCATTTGCGCCACTTGCACGCCTTCATCCAGACGC
AAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGAGCAGCTGCAGCGT
GAACTGGCCAACTTGGGAGGCCCCACGCCATACATTCCGCTCGACGTGAA
CGAGGCCAGTGCCAGCAAGTCCACATATCGTCCGGAGCCGCAGCCCGTGT
CCTGGCAACAATCACTCTGCCAATATGGCTGCCACCGGCCACAGCCTAAT
CAGCCCATGCACGTCAGCACGGATCAGATGCAGAGGGCACGCGTCCTTTG
CTCCTACGACGCCAGATCCACCGAGCTAAATTTGAGCCCCAATGAAGGTG
ATCTTCGTGACGGATGCTCTCACAGTAACAAGAATAATTACGGAAACGGT
CTATGAAGGGCTCTGGGGCCCTCGCCATTTGTGTGATGGTTCCACGAAAG
AACCACGCAA
FMO01292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EndoB-RA | 2226 | CG9834-RA | 114..1188 | 9..1078 | 5125 | 98.9 | Plus |
EndoB-RC | 2190 | CG9834-RC | 114..916 | 9..811 | 4015 | 100 | Plus |
EndoB-RD | 2154 | CG9834-RD | 114..689 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19309816..19310316 | 584..84 | 2505 | 100 | Minus |
2R | 25286936 | 2R | 19309393..19309585 | 811..619 | 965 | 100 | Minus |
2R | 25286936 | 2R | 19308574..19308813 | 1045..812 | 905 | 96.7 | Minus |
2R | 25286936 | 2R | 19310475..19310552 | 86..9 | 390 | 100 | Minus |
2R | 25286936 | 2R | 19309662..19309699 | 621..584 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:08 has no hits.
FMO01292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:08 Download gff for
FMO01292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9834-RA | 141..1219 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:26 Download gff for
FMO01292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
endoB-RA | 114..1192 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:13 Download gff for
FMO01292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EndoB-RA | 114..1192 | 9..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:13 Download gff for
FMO01292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19308573..19308813 | 812..1047 | 96 | <- | Minus |
2R | 19309393..19309583 | 621..811 | 100 | <- | Minus |
2R | 19309663..19309698 | 585..620 | 100 | <- | Minus |
2R | 19309816..19310313 | 87..584 | 100 | <- | Minus |
2R | 19310475..19310552 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:26 Download gff for
FMO01292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15196078..15196318 | 812..1047 | 96 | <- | Minus |
arm_2R | 15196898..15197088 | 621..811 | 100 | <- | Minus |
arm_2R | 15197168..15197203 | 585..620 | 100 | <- | Minus |
arm_2R | 15197321..15197818 | 87..584 | 100 | <- | Minus |
arm_2R | 15197980..15198057 | 9..86 | 100 | | Minus |