Clone FMO01293 Report

Search the DGRC for FMO01293

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:12
Well:93
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNedd8-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01293.5prime Sequence

278 bp (278 high quality bases) assembled on 2008-03-12

> FMO01293.5prime
CAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGGAAATCGAG
ATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAGCGCGTGGA
GGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTTCTCCGGCA
AGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGCAAGGTGGA
TCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCAATCCTAAC
ACCTTGTGTGGCAAGCTTTCTAGACCAT

FMO01293.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-RB 612 CG10679-RB 123..374 9..260 1260 100 Plus
Nedd8-RA 471 CG10679-RA 123..374 9..260 1260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18951406..18951539 158..25 670 100 Minus
2L 23513712 2L 18951244..18951346 260..158 515 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:31:57 has no hits.

FMO01293.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:10 Download gff for FMO01293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10679-RA 1..255 9..264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:30 Download gff for FMO01293.5prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..379 1..267 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:28 Download gff for FMO01293.5prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..379 1..267 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:28 Download gff for FMO01293.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18951239..18951346 158..267 97 <- Minus
2L 18951407..18951537 27..157 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:30 Download gff for FMO01293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18951239..18951346 158..267 97 <- Minus
arm_2L 18951407..18951537 27..157 100 <- Minus