FMO01302.5prime Sequence
1164 bp (999 high quality bases) assembled on 2008-03-18
> FMO01302.5prime
CAGTCGACATGTCTTCCACATCGGCCTCACCCATCAGCAACATAACCGTG
GATGACGAGCTCAACTTAAGCAGAGAACAAGACTTTGCTGAAGAGGATTT
CATAGTGATCAAGGAGGAGCGCGAGACAAGTCTCTCCCCCATGCTGACGC
CCCCGCACACGCCCACCGAGGAGCCGCTGAGGAGAGTGCATCCGGCGATA
AGCGAGGAGGCGGTGGCCACCCAGCTGCACATGCGACACATGGCCCACTA
CCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCACCGCCTGTGGC
TGCAGATGCAGCAGCAGCAGCAACAACATCAGGCTCCACAGCAGTATCCA
GTTTATCCCACAGCCAGCGCCGATCCCGTGGCCGTGCACCAGCAGTTGAT
GAACCACTGGATCCGCAACGCAGCCATCTACCAGCAGCAACAGCAGCAGC
AGCAACATCCGCACCATCATCACCACCACGGCCATCCGCACCACCCTCAC
CCACATCCGCATCATGTGCGTCCCTATCCCGCTGGCCTCCATAGTCTGCA
TGCCGCGGTCATGGGTCGCCACTTCGGAGCCATGCCCACCCTGAAACTGG
GTGGTGCCGGTGGAGCGAGTGGTGTACCCAGCGGCGCAACTGGCAGCAGT
CGGCCAAAGAAGCAGTTCATCTGCAAGTACTGCAACCGGCAGTTCACCAA
GTCGTACAATCTGCTCATCCATGAGAGAACCCACACGGACGAGAGGCCTT
ACTCCTGCGACATCTGCGGCAAAGCCTTCCGGCGACAGGATCATCTGCGG
GACCACCGGTACATCCACTCCAAGGACAAGCCCTTCAAGTGCAGCGATTG
CGGCAAGGGTTTCTGCCAGTCGCGCACCCTGCCGTGCACACGTCACCCAT
CTGGAGAGGTCCGCACAAGTGTCCCATCTGCAGCGAGCTTCACAGCGGGT
CACTCAGAGTCACTCAGAGCACAGCGAGCAAGCACAGAGTGTGTGACCAC
TCACCAGCACTCACATTCGTGCACAAGCATGAGTCCGCCTCACTGAAATG
CAGCATCTGCTGTCTGATTAATCCCTGCTATCTCGATTAGAGAAGCAAGC
GGAGCTGCTCCATCGATGAGAGATCTGACCGACAGCCTTCAGACCCTTCG
TTGAGCGGGTCCAG
FMO01302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| odd-RA | 2347 | CG3851-RA | 399..1390 | 9..985 | 4575 | 98.3 | Plus |
| sob-RA | 2611 | CG3242-RA | 1764..1988 | 657..881 | 720 | 88.5 | Plus |
| bowl-RH | 3435 | CG10021-RH | 1060..1281 | 651..872 | 645 | 86 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3605246..3606101 | 931..80 | 4085 | 99.3 | Minus |
| 2L | 23513712 | 2L | 3578861..3579006 | 802..657 | 535 | 91.1 | Minus |
| 2L | 23513712 | 2L | 3780422..3780581 | 651..810 | 485 | 86.9 | Plus |
| 2L | 23513712 | 2L | 3606286..3606358 | 81..9 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 3578636..3578704 | 881..813 | 210 | 87 | Minus |
Blast to na_te.dros performed 2014-11-28 22:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1200..1277 | 402..487 | 114 | 65.1 | Plus |
FMO01302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:16 Download gff for
FMO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3851-RA | 384..1342 | 1..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:52 Download gff for
FMO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 392..1350 | 1..952 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:26 Download gff for
FMO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 392..1350 | 1..952 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:26 Download gff for
FMO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3606286..3606365 | 1..81 | 96 | | Minus |
| 2L | 3605221..3606099 | 82..952 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:52 Download gff for
FMO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3605221..3606099 | 82..952 | 98 | <- | Minus |
| arm_2L | 3606286..3606365 | 1..81 | 96 | | Minus |
