FMO01303.5prime Sequence
1195 bp (1037 high quality bases) assembled on 2008-03-18
> FMO01303.5prime
CAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACGATTTCGAC
TGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGCATGTCCAA
TCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAAACCGATTA
TGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACGAACTGAAG
TCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCATACCAAACT
GGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCAGTCGGTGC
AGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCGTTGTCCAG
AAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAACCGCTATGT
AAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCTCAGCGCCC
ATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGATGAGCAAC
TTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCTGTCACGGC
TGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAACAACAACA
GCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGACTTCAGCTA
ATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATGCCGAACAC
AGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGGATCTGCAG
CGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCATTGCCAAT
CCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGCGCGTTCAG
CAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAACCTCATCC
ACACACTGCCCGGCCAAACGCAGCTGCCGGTGAAGAACAGCACAAGCCCA
CGCTGAGCCCAATCTCTCATCTCAGCCACTGCAGGAGTCCCGGGCTGCCT
CGCCCACGTGATGTGATGAGCAGCAAGTTCGCCGGCGTCTCTCACTCCGC
CACACAGCCGGAAACCTCCTTCAACCAGCGATCCCTCACTGAGTGCGAAG
CCAGACGCACGGAGCTCGGTACCGTGCCATTGCCCACGCAATGAACTCCC
ATCGGAATGCAGCGAACGGGAAGCGGAGCCGATACGACACGCTGT
FMO01303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpn-RA | 2036 | CG8704-RA | 283..1400 | 9..1103 | 5030 | 97.9 | Plus |
| h-RB | 2335 | CG6494-RB | 594..767 | 138..311 | 360 | 80.5 | Plus |
| h-RA | 2139 | CG6494-RA | 398..571 | 138..311 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8229721..8230502 | 1007..231 | 3680 | 99.2 | Minus |
| 2R | 25286936 | 2R | 8231923..8232048 | 134..9 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 8231599..8231696 | 230..133 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 8677605..8677685 | 231..311 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:16 has no hits.
FMO01303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:17 Download gff for
FMO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8704-RA | 280..1388 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:19 Download gff for
FMO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 283..1391 | 9..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:34 Download gff for
FMO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 283..1391 | 9..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:34 Download gff for
FMO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8229616..8230502 | 231..1096 | 97 | <- | Minus |
| 2R | 8231599..8231694 | 135..230 | 100 | <- | Minus |
| 2R | 8231923..8232048 | 9..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:19 Download gff for
FMO01303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4117121..4118007 | 231..1096 | 97 | <- | Minus |
| arm_2R | 4119104..4119199 | 135..230 | 100 | <- | Minus |
| arm_2R | 4119428..4119553 | 9..134 | 100 | | Minus |
