FMO01304.5prime Sequence
1150 bp (760 high quality bases) assembled on 2008-03-18
> FMO01304.5prime
CAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAATATACACG
CAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTCAGGCAAAT
CGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGATGCCCCGGA
ATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTGCCTTCCGG
CAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGCCGAAGTGT
GGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGATGCGCACG
AGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGCTGTACGAG
GTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGACCTGTACAA
GAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATTTGAAGATA
TTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAGAGCAACAG
CAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGATGATGGCGA
GGAGTCACAGGAATGTGAGGAGTCACAGCCCGATGAGGAGGAAAGTCAGC
AAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACGAAGCTTTG
GCAGAACGAGGACGGCGACAGCGAATACAGATGCTGATTCTATGTCAGAT
ATAGAAGCCACATCGCGTCAATCGGCCCTCGGACGAAGATAAAAAGCCTC
GTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCGACTTT
CCTCCAATCTGGCGAAGAAAAAACGAAAACATACATAAGCCAAAAGTCGC
CCATCTGTGGACAATTGCGGCAAGAAATTTACCGACAGAGGCACTTAATC
TGATCGGGTGTGCCATCCGGCGCGTCAGCCCTTCTAGTGTCCTGATGATG
GAAAAGGATTCTCAAGTACATTCTGAACTCTCATCTCGTGACAACGCGAG
AGAGCTACCTGTCAGTCGTCGCAGAGGTTTGTGCAGTCATGCGATCGCCC
AGTACCCGATTCGGACCAAAACCGACTTCCATCTAGCATTGTCTACGGTG
CCGACGCAATCTCAGCCCAGGGTCTCAGTGCGTGAAGCTAATCCCATTGT
FMO01304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17802-RA | 1706 | CG17802-RA | 82..1016 | 9..945 | 4095 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17804237..17804997 | 887..122 | 3310 | 97.3 | Minus |
| 3R | 32079331 | 3R | 17805055..17805168 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:04 has no hits.
FMO01304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:19 Download gff for
FMO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 81..1030 | 9..958 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:56 Download gff for
FMO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 82..1031 | 9..958 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:15 Download gff for
FMO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17802-RA | 82..1031 | 9..958 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:15 Download gff for
FMO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17804161..17804996 | 123..958 | 95 | <- | Minus |
| 3R | 17805055..17805168 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:56 Download gff for
FMO01304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13630777..13630890 | 9..122 | 100 | | Minus |
| arm_3R | 13629883..13630718 | 123..958 | 95 | <- | Minus |
