FMO01305.5prime Sequence
1194 bp (842 high quality bases) assembled on 2008-03-18
> FMO01305.5prime
AAAGACAAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGT
ACGCCGATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCT
CCCCTGCAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCAC
GGCGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGC
AGCAGCAACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCG
AACAACAACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCAT
GCACCAGATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGC
AGAAGCAGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTG
ACCACCCAGGAGATCACGCTCGACCTGCAGCACCTTATATTCTACCAGTT
CAGGGACACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGG
GCGGACTCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCG
AAGGTCCTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAG
GGGAGGCGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCG
TGCACGCCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCC
GACTCCAGCACGATCAAAGAGGAGCCCATCGACCCCGAGTACAGGCGGCA
CCTGCAGGAGGCGGCTAGCCAGCAGCCGCCTTCATGGGCAATGGAGCAGC
CTGTACAACGGCTACGATCGGGGGCGAATGGCTTGACCGGGGCGGAAACC
CACTCACGGAGCAACATCACGTCCAGCAGCAACGGGAGCAACGGCAGCAC
GGCAGCAGCACGGCAGCCAGTTCACTATCTGACGACGGCAACGTTCTGCG
CACACATCTGCCTCCACTGGCGCCGCAGCAGAGCACCAATCTGCTCAGCA
GCCAGCAGCTGCCGCGCAGCAGCAGCATCAGCAGCACAGCACGCAGCAGC
ACCGAGTCCAGCATCAGGCATGTGACAGGCCGATGATACCGTAGCGGCGA
CGAACACATACGTGCCAGACGAAGGCTTAGGTCCTCGAAGTGAGACGGTA
ACCTGTTCTCAAGAAAGACCCTCTTTTTCGGACTTGTGTGGATG
FMO01305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-RB | 2581 | CG4354-RB | 333..1409 | 23..1074 | 4500 | 96.1 | Plus |
| slbo-RA | 2786 | CG4354-RA | 538..1614 | 23..1074 | 4500 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24332860..24333770 | 925..23 | 4050 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 18:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 679..765 | 111 | 58.6 | Plus |
FMO01305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:51 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:58 Download gff for
FMO01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1598 | 23..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:18 Download gff for
FMO01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1598 | 23..1063 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:18 Download gff for
FMO01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24332705..24333775 | 18..1063 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:58 Download gff for
FMO01305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20220228..20221298 | 18..1063 | 95 | -> | Minus |
