FMO01306.5prime Sequence
1213 bp (1008 high quality bases) assembled on 2008-03-18
> FMO01306.5prime
CAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGTTCGAGGAT
CAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTAGGGCTGTC
CAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACACGGGACGCA
GCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATGGATCGGCG
GCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCGCCGTACTT
CCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCAACAGAACC
ATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGCCCCTCTCC
TCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCGGGACTGAG
ATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGAGGCTGAGC
TGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACACGGATAGG
AGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCACGGAACGAG
ACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCTTCAAAACG
CCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGGCGTTCATG
TCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAAGCCGGGAA
CATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCCTGGTCGCC
TCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAGCCGAAGTA
CAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTGCTGGGCGG
AGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTTGAGGGAGA
AGCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGAAAGCGGCC
AACGTCACCCTACTGACATCTGATGAGGGGAGGCACGCACTGGCCAAGAC
TTTCACTTCGTAGCGAAACCGAATCCCGCCAGCAGCTGCGAGTACATCGT
GCCCCCACAAACGAGCCGCAGGACTCGAACGTCGAAAAAGCTCATTCTCC
CATCCCAGACAGAATAACAAAGACCTATGGCGATCTGGACAGATCGACGA
CCATGACCGATTCAGGCATCGCTGACCCTCAAGTGCCAGGCCCACGTGAG
ACGACGTTTTCTT
FMO01306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfAP-2-RB | 2219 | CG7807-RB | 425..1553 | 7..1121 | 5115 | 97.7 | Plus |
| TfAP-2-RD | 2237 | CG7807-RD | 425..1571 | 7..1121 | 4925 | 96.2 | Plus |
| TfAP-2-RC | 1805 | CG7807-RC | 69..1139 | 65..1121 | 4825 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21609418..21609649 | 65..296 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 21611143..21611351 | 465..673 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 21611995..21612185 | 673..863 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 21609716..21609886 | 294..464 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 21612243..21612352 | 861..970 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21599280..21599339 | 7..66 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 859..930 | 112 | 64.9 | Plus |
FMO01306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:53 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:52 Download gff for
FMO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfAP-2-RB | 420..1553 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:19 Download gff for
FMO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfAP-2-RB | 420..1553 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:19 Download gff for
FMO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21611995..21612184 | 673..862 | 100 | -> | Plus |
| 3L | 21599275..21599338 | 1..65 | 95 | -> | Plus |
| 3L | 21609419..21609649 | 66..296 | 100 | -> | Plus |
| 3L | 21609719..21609886 | 297..464 | 100 | -> | Plus |
| 3L | 21611143..21611350 | 465..672 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:52 Download gff for
FMO01306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21605095..21605284 | 673..862 | 100 | -> | Plus |
| arm_3L | 21592375..21592438 | 1..65 | 95 | -> | Plus |
| arm_3L | 21602519..21602749 | 66..296 | 100 | -> | Plus |
| arm_3L | 21602819..21602986 | 297..464 | 100 | -> | Plus |
| arm_3L | 21604243..21604450 | 465..672 | 100 | -> | Plus |
