FMO01307.5prime Sequence
1231 bp (827 high quality bases) assembled on 2008-03-18
> FMO01307.5prime
CAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTCAGCCGCCT
GGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGATGGCGCGA
CTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCATATTGGGG
ATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGGCGCATGCG
GAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTCCGCACCGA
AAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTACTACTTGA
ACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGGAAATCCCC
GCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCTCTGGGCCA
GAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGTTTCGATTG
TGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGTACGACATA
CAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAACTGGGCCAT
GTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCACATCAGTA
CCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCGAACTGTTC
CGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCGGAAAACAC
ACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGCCACCAAGAA
GCTGCTGAAGAGCCACGTGGTGCGACACGTTTAACTGCTACAAGTGCACC
ATGTGCGACATGACCTGCAGCTCGGCCAGTTCGCTGACCACCCACATTCG
GTACCGCCACCTCAAGGACAAACCGCTCAAGTGTAGTGAGTGTGACACCG
CGCTGCGTTCGGGAGTCGGATCTGGCCAACACGTTCAAATTGTCTACTCG
AAGACGTGCACAGTGCGAGCATCGCGACTGTCATAATTCTGTACGCACTA
CACGCAGATGCACGGACTTCTCGAAGTGCACGGCAACAATCCCATCTGTA
CGCCTGCCACTGCTGCAGGGCTTCTTCAGAGCGCAGTCGCTCTCGCTTCA
CTTCAGGATAGCACGGCTTCGTTGACTTCGGCCCACATGATTTCACTTAC
CTTGACAAACGATTCACGCCCTCGACACACTGCACCTCGAGAACTGTGAG
AGGTACTCCTCACTAATATCGTGTCTGCTGC
FMO01307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-RB | 2197 | CG17829-RB | 68..1165 | 8..1094 | 5020 | 98 | Plus |
| CG17829-RA | 2256 | CG17829-RA | 127..1224 | 8..1094 | 5020 | 98 | Plus |
| CG17829-RC | 2199 | CG17829-RC | 374..1167 | 312..1094 | 3500 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 625668..626359 | 8..699 | 3460 | 100 | Plus |
| X | 23542271 | X | 626504..626815 | 702..1011 | 1195 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:51 has no hits.
FMO01307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:23 Download gff for
FMO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RB | 46..1150 | 8..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:59 Download gff for
FMO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..1231 | 8..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:10 Download gff for
FMO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..1231 | 8..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:10 Download gff for
FMO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 625668..626362 | 8..701 | 99 | -> | Plus |
| X | 626504..626820 | 702..1015 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:59 Download gff for
FMO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 519701..520395 | 8..701 | 99 | -> | Plus |
| arm_X | 520537..520853 | 702..1015 | 96 | -> | Plus |
