FMO01309.5prime Sequence
1213 bp (1033 high quality bases) assembled on 2008-03-18
> FMO01309.5prime
CAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCATGCAGCAG
CACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGCATACCAGA
TCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGTGATCATGC
CACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGAACGACGAT
CTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATCACCAAGAG
TGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGGCTTGGAGG
ACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTGGCGACTGC
CGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGAGCCGAGCC
GCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGCCACCGGTG
CCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGTTGACCAAT
AACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATGCACAAGTA
TCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCAGATTCCCT
GGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCGTGGCCGTG
ACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGACAACAATCC
GTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAAACGCAAGA
TGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGTCACTATCC
CATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAAGGAGGCGG
TGAGACAGCCGGAGGAACATCGTCGATCGGCGATTCGGATGGTCCGCAAA
TCAAGCGCCTGAGATCAAATGGCTCAGCCTGCTCCTTATCATCATCGCTG
GACGATCAGTCGGTGCCTGGCGCAGTCTTTGGCCCTGGGCTCTCCACGCC
CATCTACATCGCATTCGCATCGCATCCCCTCAGGCGAGGATGCTCAGCGT
TTTATGCAGCACTTCAGCAGAATATGCAGAGCTGCTGAGGCATCGCTTGT
GGATTGCATTACCTACTTTGGGAACCATGAGATATGGGAGGACGATCAGC
CTCCTATGTATCCACGACACCGGATGTCCTACAGGGCGGATTGGACTCAA
TCTCGTGTGCTCG
FMO01309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc2-RA | 1945 | CG5187-RA | 355..1535 | 8..1165 | 5270 | 97.7 | Plus |
| Doc1-RA | 1526 | CG5133-RA | 173..909 | 16..743 | 1435 | 80.2 | Plus |
| Doc1-RB | 1339 | CG5133-RB | 145..722 | 166..743 | 1330 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9013165..9013624 | 1105..660 | 1645 | 96.1 | Minus |
| 3L | 28110227 | 3L | 9014708..9014977 | 524..255 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 9017929..9018088 | 256..97 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 9043385..9043655 | 254..524 | 710 | 84.1 | Plus |
| 3L | 28110227 | 3L | 9014492..9014629 | 662..525 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 9005813..9006034 | 295..516 | 495 | 81.5 | Plus |
| 3L | 28110227 | 3L | 9018801..9018892 | 99..8 | 460 | 100 | Minus |
| 3L | 28110227 | 3L | 9006155..9006296 | 521..662 | 410 | 85.9 | Plus |
| 3L | 28110227 | 3L | 9044342..9044425 | 660..743 | 270 | 88.1 | Plus |
| 3L | 28110227 | 3L | 9006361..9006452 | 660..751 | 265 | 85.9 | Plus |
| 3L | 28110227 | 3L | 9041547..9041639 | 16..108 | 240 | 83.9 | Plus |
| 3L | 28110227 | 3L | 9043731..9043861 | 532..662 | 220 | 77.9 | Plus |
| 2L | 23513712 | 2L | 5466038..5466111 | 648..721 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:13 has no hits.
FMO01309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:26 Download gff for
FMO01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5187-RA | 344..1540 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:18 Download gff for
FMO01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc2-RA | 350..1546 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:35 Download gff for
FMO01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc2-RA | 350..1546 | 1..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:35 Download gff for
FMO01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9013085..9013621 | 663..1176 | 94 | <- | Minus |
| 3L | 9014492..9014629 | 525..662 | 100 | <- | Minus |
| 3L | 9014708..9014975 | 257..524 | 100 | <- | Minus |
| 3L | 9017929..9018085 | 100..256 | 100 | <- | Minus |
| 3L | 9018801..9018895 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:18 Download gff for
FMO01309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9007592..9007729 | 525..662 | 100 | <- | Minus |
| arm_3L | 9006185..9006721 | 663..1176 | 94 | <- | Minus |
| arm_3L | 9007808..9008075 | 257..524 | 100 | <- | Minus |
| arm_3L | 9011029..9011185 | 100..256 | 100 | <- | Minus |
| arm_3L | 9011901..9011995 | 1..99 | 95 | | Minus |
