FMO01310.5prime Sequence
1206 bp (1000 high quality bases) assembled on 2008-03-18
> FMO01310.5prime
CAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGCATTGGCAG
CAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCAACACC
ACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGGTGCAA
ATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTCCAGAT
ATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACCGAGTC
ATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTCAGCCG
CCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCAGCGAC
GAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCGCCCAG
CAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGACGACT
GCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCGCTGTG
GAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGGCAGCC
GCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTATTGCA
AAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCTGCCTG
GCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTTGTTTT
TCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGACAAAGG
GAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGACCCACTAC
AGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCCACCTA
CCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTCGAGCCCGC
ACTCGGACCCTAGTCGGAGCATTGTTCCTACGGCATCTTTGTGCCCGCGT
CCCACGTAATCAACGACTGCCGCAGCAGCTCGTCAAAGGCAGCCTCGCAA
GCGCAAGCCCAGACATCGAGGCGTTCACCGCCTAACTTAGATCTCACACT
GAGTACGTGACTTGGCCGAGCTCGCCACTTAGCTCTCGGTCCCGCACAAA
CGAATGCGACCTCGTAGCCATACCCCACCTGCTACATGAATCTACTGCAT
ATCTAATCCTGAGTCAGGATCTAAACATGTCACAAAAAACTGGTTTATCT
ACAGAA
FMO01310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RA | 4114 | CG8376-RA | 972..2093 | 7..1115 | 5125 | 98 | Plus |
| ap-RC | 3089 | CG8376-RC | 972..2090 | 7..1115 | 5070 | 97.7 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..1150 | 51..1115 | 4905 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5717281..5717500 | 477..258 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 5717555..5717767 | 259..47 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 5708619..5708869 | 1031..789 | 910 | 96.4 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 791..611 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 616..475 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 47..7 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:19 has no hits.
FMO01310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:48 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:04 Download gff for
FMO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..2101 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:34 Download gff for
FMO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RA | 965..2101 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:34 Download gff for
FMO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5708611..5708867 | 791..1040 | 95 | <- | Minus |
| 2R | 5708926..5709099 | 617..790 | 100 | <- | Minus |
| 2R | 5716649..5716788 | 477..616 | 100 | <- | Minus |
| 2R | 5717282..5717498 | 260..476 | 100 | <- | Minus |
| 2R | 5717555..5717766 | 48..259 | 100 | <- | Minus |
| 2R | 5725821..5725864 | 1..47 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:04 Download gff for
FMO01310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1596431..1596604 | 617..790 | 100 | <- | Minus |
| arm_2R | 1604154..1604293 | 477..616 | 100 | <- | Minus |
| arm_2R | 1596116..1596372 | 791..1040 | 95 | <- | Minus |
| arm_2R | 1604787..1605003 | 260..476 | 100 | <- | Minus |
| arm_2R | 1605060..1605271 | 48..259 | 100 | <- | Minus |
| arm_2R | 1613326..1613369 | 1..47 | 93 | | Minus |
