FMO01311.5prime Sequence
1171 bp (990 high quality bases) assembled on 2008-03-18
> FMO01311.5prime
CAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTCGCAGCTGG
TACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGTGGCAATGG
GGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGGTAGCAGCC
TGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGGCGGGCAGC
AGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCCGGACTGGA
CACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGGACACCACC
GGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGCCCTCCACC
CATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCGCTGAGTCC
CTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGCCTGGAGCA
TGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACAAGCTGGGC
CAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCATTCGTTCCC
CTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGTGCAAACCG
GTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACCAGCAGGCC
ACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGATATCAAGCC
GTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGGCACCACCC
ACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTGTGAATTGT
GGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGGGACACTATCT
GTGCACGCCTGTGGCCTGTACTACAAATGAACGGCCAGACCGACCCCTGA
TCAGCCAAGCGAGACTGACCCTGCAATCGCTGCAGAGTGCGCAAAAGGCG
GGCACATCTGCGCAACTGCAGACACAACACACCCTTTGCGACGCATGCAG
CGGTGACCCGTGTGCACGCTGCCGATGACTATAAGCTCCAATGTCAATCG
TCCACTCCACATGAAAAGAGCAATCGAACGGTATCCAAGCTGGATCCAGG
TCCAAAAGAAAGGTCGGGTGGCTCCATGGCAATCGGGATGCACTTGGCAT
GGGGCAATTCAAGGCACTGTC
FMO01311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grn-RA | 3451 | CG9656-RA | 416..1504 | 4..1067 | 4770 | 97.3 | Plus |
| grn-RC | 4090 | CG9656-RC | 416..1189 | 4..777 | 3855 | 99.9 | Plus |
| grn-RB | 4090 | CG9656-RB | 416..1189 | 4..777 | 3855 | 99.9 | Plus |
| grn-RC | 4090 | CG9656-RC | 1828..2143 | 777..1067 | 920 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8179355..8179681 | 330..4 | 1620 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8167830..8168117 | 618..331 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 8167371..8167533 | 777..615 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 8160980..8161110 | 903..776 | 505 | 97.7 | Minus |
| 3R | 32079331 | 3R | 16039052..16039147 | 777..871 | 250 | 86.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:00 has no hits.
FMO01311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:49 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:13 Download gff for
FMO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grn-RA | 413..1506 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:30 Download gff for
FMO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grn-RA | 413..1506 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:30 Download gff for
FMO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8160963..8161108 | 778..917 | 95 | <- | Minus |
| 3R | 8167371..8167530 | 618..777 | 100 | <- | Minus |
| 3R | 8167831..8168117 | 331..617 | 100 | <- | Minus |
| 3R | 8179355..8179682 | 1..330 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:13 Download gff for
FMO01311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3986685..3986830 | 778..917 | 95 | <- | Minus |
| arm_3R | 3993093..3993252 | 618..777 | 100 | <- | Minus |
| arm_3R | 3993553..3993839 | 331..617 | 100 | <- | Minus |
| arm_3R | 4005077..4005404 | 1..330 | 99 | | Minus |
