FMO01313.5prime Sequence
1158 bp (977 high quality bases) assembled on 2008-03-18
> FMO01313.5prime
CAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTACGCGCCAC
TATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTGGCGGCGGC
CAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGACCAGTACT
CCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCCCGCACCAG
AACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTGATAGCCAT
GGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGGGATCTATC
AGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGCAGGGCTGG
CAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTCGTGAAGGT
GGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGACTCTGGATC
CGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCCGGCGTCGC
CGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCCATCAAGCG
GCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCTCAAGCTGA
TGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATGCTGCCCAC
TTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGCAAGGAGGT
CTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGCCCAAATGA
ACCACTTGGCTGGCGGCGGAGTGAGCATCCCGGCTTCACCGTGGACTCAC
TCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTATCCCTACCAC
TTGAACGAGACAACTTGGCCACGGTGGCCAGCAGTCAGATGCATCATGTC
CACCACGCTGCGGCGGCTCATCATGCCCAGCACTGCAGCGTCATGTGCGC
ACGTGTCATCTCTGACCCCGGCGCAGGAGCGGGAGCATCGTCGACCCTCG
CCACCACGATCTCACTCCGCATGTCCGCGCCGGGGATGTATACCCGAATC
GCCACATCGACCGGTTCTCAATGGGCACAGTACCCACCACCGACTATACA
ACACAGCAACGATCATGATGATGACACGTGCCGCGCGTGACAGTGAAAAT
CTCTCCAG
FMO01313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| croc-RA | 2347 | CG5069-RA | 285..1357 | 8..1055 | 4725 | 97.2 | Plus |
| fd59A-RA | 2228 | CG3668-RA | 593..876 | 213..496 | 325 | 74.7 | Plus |
| fd64A-RB | 1414 | CG1132-RB | 486..669 | 215..398 | 290 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21475253..21476195 | 947..8 | 4550 | 99.6 | Minus |
| 2L | 23513712 | 2L | 3826211..3826373 | 286..448 | 245 | 76.7 | Plus |
| 3L | 28110227 | 3L | 4020416..4020478 | 336..398 | 240 | 92.1 | Plus |
| 3R | 32079331 | 3R | 25083588..25083851 | 216..479 | 225 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:25 has no hits.
FMO01313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:32 Download gff for
FMO01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5069-RA | 356..1304 | 1..947 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:05 Download gff for
FMO01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| croc-RA | 279..1227 | 1..947 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:04 Download gff for
FMO01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| croc-RA | 279..1227 | 1..947 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:04 Download gff for
FMO01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21475253..21476201 | 1..947 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:05 Download gff for
FMO01313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21468353..21469301 | 1..947 | 99 | | Minus |
