FMO01316.5prime Sequence
1192 bp (1026 high quality bases) assembled on 2008-03-18
> FMO01316.5prime
CAGTCGACATGGTTGGGAGATCATCGGGAAAAATGGAAAGATCAGTGGAC
GCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCATCCATACT
GGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTGGGAAATGT
TGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATGAAATGCCA
CAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCCTTTCACTT
CCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCTCCTCCAGC
TCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAAGAGGTACT
ATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCGAGGATCCATTGGA
CACAAATGTAACCAAATTGGACGCTAATCGGCCTGATGTAAAAACTGATA
TCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGAGTGAACCA
TTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACGGAAGATGA
AGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGAAAATGATA
ATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGACAGTGGGC
TCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGAGGGCGCCA
AACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTGTGGAGTGA
GTTACTCGACTCAAAAGGCGTTGGCAAGGCACGTTGCCAAGCACAAGGAG
CAAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGTCGGGGATT
TCGTACCAATGCCCAGCTAACGACCCATAGACGCCGTCATACTGGAGAGC
GTCCTTTTAAATGCCCCCTCTGCCCGAAAGCTTATACGCACGGTCCGACT
CTGAGTCGCATATGCACACCCACGACGAGGAAGGTCACAAATGTCCACAG
TGCGACAAACTTTTTACACGAGAGGCATCTAGGCCCATATACAGAGGCAC
ACTGCGACGACCCTATAGTGTCCGACTGCCCAACTTTGCAAACTCTGCTA
GTGCTAGCGTCTGCAAGAAACGACCTTAATTGACTGCGCAGATCGTACGA
CCGCATGATACCATTGGGTCACAACAGGAATGCCATTCAAGT
FMO01316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..1159 | 9..1082 | 5135 | 98.8 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..1123 | 520..1082 | 2580 | 97.7 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 9..483 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13964119..13964629 | 519..9 | 2555 | 100 | Minus |
| 3L | 28110227 | 3L | 13963471..13964013 | 1054..520 | 2395 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:04 has no hits.
FMO01316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:38 Download gff for
FMO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8474-RA | 62..1150 | 4..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:03 Download gff for
FMO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..1159 | 4..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:16 Download gff for
FMO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..1159 | 4..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:16 Download gff for
FMO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13963439..13964013 | 520..1082 | 97 | <- | Minus |
| 3L | 13964119..13964632 | 4..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:03 Download gff for
FMO01316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13956539..13957113 | 520..1082 | 97 | <- | Minus |
| arm_3L | 13957219..13957732 | 4..519 | 99 | | Minus |
