FMO01317.5prime Sequence
1190 bp (1003 high quality bases) assembled on 2008-03-18
> FMO01317.5prime
CAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTAGTCCCGAG
GATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACACCAACCAG
TGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATATCAGTCGCC
TGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATTGCGATGAT
AACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCTCCTTTGAG
TCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCTGATGTCGC
TGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATTTGAACCAC
CTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGACGCCAATGG
TGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCACTCAGTCTC
CATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGGTAATTTCA
GTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCTCCCTCGGG
TTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGCAGCCGCCG
CCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGCTGGCCCTG
CCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGCTTGGGCAT
GAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTTTGCCCAGT
TCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGCAGTTCAAC
AGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGCCTGGCACAGACGAT
CCGGCACTGACCGCCCAGGTGGCGGCAGCTCTAGTTCCTAATGCAGAGCC
AACTGCAGGCCTCAGTCAGGCCAGTCAGCATTGCAGCACTGCAGAAGCAC
AGCAGCGCCAGTGATGAGCCACTGCAGCTGACCACAGATGACGCACAGCA
CGCAGTCCACACCGCACTCGATCCGCAGCCCATCGCATCGCAGTCGCAGC
TCACCCAGCAGTTGCACCATCACACCACATCCATGCAATCAGCCGCCCAG
CCGGCGTCAGTGATGACGTATGCTGTACCCATAGCCTATGAACCAAGACA
GTACACCAACCCACTAGACGTGGTCCAGTGTGGATGTGTT
FMO01317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nub-RE | 2829 | CG34395-RE | 214..1335 | 9..1106 | 4970 | 97.6 | Plus |
| nub-RD | 3267 | CG34395-RD | 652..1773 | 9..1106 | 4970 | 97.6 | Plus |
| nub-RB | 4497 | CG34395-RB | 2012..3003 | 139..1106 | 4320 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12625454..12626313 | 183..1031 | 3660 | 98.3 | Plus |
| 2L | 23513712 | 2L | 12618996..12619125 | 9..138 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 12622975..12623019 | 139..183 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:14 has no hits.
FMO01317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:40 Download gff for
FMO01317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6246-RA | 643..1770 | 3..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:12 Download gff for
FMO01317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 646..1773 | 3..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:36 Download gff for
FMO01317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nub-RD | 646..1773 | 3..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:36 Download gff for
FMO01317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12618990..12619125 | 3..138 | 97 | -> | Plus |
| 2L | 12622975..12623019 | 139..183 | 100 | -> | Plus |
| 2L | 12625455..12626376 | 184..1084 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:12 Download gff for
FMO01317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12618990..12619125 | 3..138 | 97 | -> | Plus |
| arm_2L | 12622975..12623019 | 139..183 | 100 | -> | Plus |
| arm_2L | 12625455..12626376 | 184..1084 | 97 | -> | Plus |
