FMO01318.5prime Sequence
1192 bp (1010 high quality bases) assembled on 2008-03-18
> FMO01318.5prime
CAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGGCGCCAAAC
AGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACGCCCATAAA
GATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGCGGCTATGC
AGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCACCGTCTCC
TCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAGCAGACGGT
TCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAATCCCAGCA
TGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGGAGAAGACC
ACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCCACCATCGA
CAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGGCCAGGTGG
ATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAATCATGAAG
CTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTACTGTTTGC
CAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGCTTGGGTGC
ACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACATTGCCCAG
GCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATTGTGCCGCG
CGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGGCAGTACAT
CCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCTCCACCTCC
AACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCGGGCAATGCTACCGC
CACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGACCACCGCTG
GTGGCCTCAAGCTGGACACACGGGTGCAACCAATGCCGCGAGGTGCTCGG
CTTCAGCACTGTCACTCGACATCTTCTCAGCGCACTGCAGCAGCACACAA
CAGCAGCACAGCACGCGTCTAGTAGCAGCAGCACACAGCAGCAGCACATC
ACAGCCCATTCCAGCAGTCGATTATCAGCAGGCGCTGGTGCAACGTTGCA
TCCTTTATCGAATGCGATCAGCAAGCGCCCACTTTGCAAGCGGAACCGCA
ATCTCTACCATACAGTTGTCCATCGAAACCACCCCGAGAAGT
FMO01318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 193..1319 | 8..1110 | 4965 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819577..6820528 | 995..49 | 4510 | 99.5 | Minus |
| X | 23542271 | X | 6820683..6820727 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:26 has no hits.
FMO01318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:41 Download gff for
FMO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-RA | 183..1175 | 1..989 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:08 Download gff for
FMO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..1179 | 1..989 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:37 Download gff for
FMO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 187..1179 | 1..989 | 99 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:37 Download gff for
FMO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6819583..6820524 | 53..989 | 99 | <- | Minus |
| X | 6820683..6820732 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:08 Download gff for
FMO01318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6713616..6714557 | 53..989 | 99 | <- | Minus |
| arm_X | 6714716..6714765 | 1..52 | 92 | | Minus |
