FMO01321.5prime Sequence
1190 bp (991 high quality bases) assembled on 2008-03-18
> FMO01321.5prime
CAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGCTGACCGAG
AAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCCTCGATTTT
CGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCTGCAGATTA
TGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGCCGGGGCAC
ATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGCTTCAAGCA
GATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCTCACGGGTA
ACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGATGGTGGCT
TCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCAAGCGAAAC
GCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCAGGTGATCA
TCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCAGGACGGTA
GCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAGCTGAAGGT
GGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCATGCTGGAGG
ATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCCAGAAGGCA
TCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGGATCTTGAA
CAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACCCAAAGTCA
AGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTCTGGACTCG
GATCTGCCATTGGACGATCAAGATGATCCGACCAAGAACGCCGAGAAGGT
GGCCACCGATGTGTTCCTCTGTCCCGATTGCGAACGCTCCTTTCCGCTGC
AGCAGCTGCTCGAGATCCATCGGCTGAATCACACTCGCTCGCGCAGCTTC
CAGTGTCTCCTGTGCGAGAGAGCTTCTTCTCAAGTACGACCTGACAGCCA
CAACTTTGTGCCACCGGCGAGCGGCATCAGTGCGCCATCTGCTCGAAAGC
TCAACGAGCATGCTCCATCGCCACGAACCACCCACGACGTACCAGTTCAC
TGCGTAACTGCGAGAGCTTCTTCGGCAGAATGGAAGACGCTAGCACTCAG
AAAGCGTCCGTTCAATGCGGGTCCGCCCCCAGCGATTGAC
FMO01321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..1425 | 9..1115 | 5055 | 97.5 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..1482 | 169..1115 | 4255 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23550150..23551038 | 1050..169 | 4060 | 98.4 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 172..9 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:16 has no hits.
FMO01321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:46 Download gff for
FMO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-RA | 294..1400 | 1..1092 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:00 Download gff for
FMO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1394 | 1..1092 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:22 Download gff for
FMO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 288..1394 | 1..1092 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:22 Download gff for
FMO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23550101..23551036 | 171..1092 | 97 | <- | Minus |
| 2R | 23554255..23554425 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:00 Download gff for
FMO01321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19437624..19438559 | 171..1092 | 97 | <- | Minus |
| arm_2R | 19441778..19441948 | 1..170 | 97 | | Minus |
