FMO01322.5prime Sequence
1183 bp (1008 high quality bases) assembled on 2008-03-18
> FMO01322.5prime
CAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCAAGGAAGCC
GCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATTCCTGTTGA
CCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGATCAGTATT
TTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCACTCAAAAT
GGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGACAACAAAGC
GGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAACTCGCACCA
TTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCCAAAAGACA
ATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTGAAACTGGA
CGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGTGCTAAAGC
TGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACGAAGTAGAT
GCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAGGTGGTGGA
GGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTCGCCCTTTT
ATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTCCAGAAATT
CCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGCTCTCTGGC
CGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAGTTCCACGC
ACAGCAGCAGCACCGACAACATCTTCCTGCAGAGCCGGTACTGACCCTGG
ACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATCAATCGGAGC
TTCGAACTGGCCGGAGCCGTATTCTCATCACCTCCGTCGTGCTAAACGCC
TGTCTCATGGACGCTTCAATCAATAGTAAGCCTGAATGACAAAGAGCGCT
GGACTTGCCGCACTTCGATTGGATCACATGACAGTAGTTCTGCGACAGCG
AGTAGCCTGTGTCTCACTGCAATACGATCGCAGCGGGCACCCGACGCAAA
AACAGCCACCGCATCGCATCTCTGCCCTTCGCCAATCAACGCATGAGTAC
TGGAGGATGGCAGTCGATTGGATCCATGTCGCCGGCCAGTCTCCCGGAAC
TGCCCACCACACATAAGCCTTCCCGGGGTGCGA
FMO01322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..1271 | 9..1089 | 4920 | 97.6 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..1477 | 9..1089 | 4920 | 97.6 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..1407 | 9..1089 | 4920 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14317697 | 263..1011 | 3250 | 97.9 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 9..265 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:21 has no hits.
FMO01322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:28 Download gff for
FMO01322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-RB | 359..1472 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:53 Download gff for
FMO01322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 289..1402 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:35 Download gff for
FMO01322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 294..1407 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:35 Download gff for
FMO01322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316604..14316867 | 1..264 | 98 | -> | Plus |
| 3R | 14316939..14317788 | 265..1089 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:53 Download gff for
FMO01322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142326..10142589 | 1..264 | 98 | -> | Plus |
| arm_3R | 10142661..10143510 | 265..1089 | 96 | | Plus |
