FMO01324.5prime Sequence
855 bp (440 high quality bases) assembled on 2008-03-18
> FMO01324.5prime
AATAGAAAAAAAAAAAGTTATCAGTCGACATGGTCTGCAAAACTATCTCA
CCGGGTGTAAACATGCAGCTGAAGATGGAACAGCAGACAACGCAGCAGCA
GCAGCAACAACAGCAACAGCAACAGCAACAGCAACAATTGCAACAGCAAC
AGCATCAGGCTCTAACCAAGCAGCAGCTTCAACTGCTGGACAAAATCAAA
CTCGAGTCCAGCAACGGCGCCGATCAGTTGGCCCAGCAGACGGCCAACAA
TCTGGATGAGCAGCAGGAGCAGCAGCAACAACACCAACAGCAAGCCGCAA
CATCGGTGGGCGTGGTGGTGCAGACGGGCCAAGCGGGCGTCAGCGAACCG
GAGGAGCAGTACGTGGTGGTGCCACGCAACCTGCGCCGTATTCTCACCAC
AGCCGGCACACTTGAATTAAACGAAGCTCGTGAAGGAGAACTGATCACTA
ACGCCAGCAACGCGAGCTCAGGATCTGCTTCGGATAGCCACATCGAGTAC
CAGCGCAGTGCACACCATTCTCCCGGAGCCACTCACTACGTGCAGATGGC
GCCACGCAACGCAGAGGTGACGGAACAGGTGGGAGCTGCTGCCGGAGCTC
CGCCGGGGCACCATCTTCGCCTATCCTATTATCTGCAACGGTGACGATGT
GGCCGCGAATCAAAATCGAAACACTCGAGAAGGGAGAGGCGACGGGGGGA
GTCGAACAACGGCAGCAGCAACTGCAGCAACATCAGCATCAGCAACACGG
CAATGGTCCCACACCCAACGGAACTAGCTACGGCGAGACCATATTGATCA
CAGCGAGGGCGGAGGCACTGCACTTCCCACCAAAAGCAGTAGCAGCATCC
AGCAC
FMO01324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 3086 | CG10278-RA | 466..1289 | 30..854 | 3635 | 96.7 | Plus |
| GATAe-RC | 2879 | CG10278-RC | 301..1082 | 72..854 | 3440 | 96.7 | Plus |
| GATAe-RB | 2983 | CG10278-RB | 408..1186 | 75..854 | 3425 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16016226..16016565 | 73..412 | 1670 | 99.4 | Plus |
| 3R | 32079331 | 3R | 16016709..16017116 | 413..822 | 1525 | 93.7 | Plus |
| 3R | 32079331 | 3R | 16012739..16012787 | 30..78 | 215 | 95.9 | Plus |
Blast to na_te.dros performed 2014-11-28 19:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6916 | 97..293 | 362 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6943 | 73..306 | 356 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2539 | 66..302 | 348 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 101..304 | 277 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2665 | 80..302 | 274 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2832 | 77..304 | 239 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6940..7209 | 34..304 | 218 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6891 | 705..854 | 181 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2383 | 705..747 | 179 | 90.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6879 | 705..854 | 175 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2442 | 169..301 | 174 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6866 | 169..307 | 165 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6498..6757 | 60..306 | 161 | 57.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1151 | 189..304 | 160 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6820 | 705..753 | 157 | 82 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2391 | 259..304 | 155 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6778 | 247..306 | 153 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1111 | 259..309 | 152 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 233..304 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6841 | 705..753 | 148 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 208..304 | 144 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6927 | 705..788 | 144 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2418 | 176..304 | 143 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6846 | 705..747 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2435 | 705..795 | 137 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2364 | 239..304 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6825..6868 | 705..748 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1574 | 259..306 | 129 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2549 | 705..854 | 128 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2430 | 180..304 | 127 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1161 | 209..292 | 127 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2467 | 705..747 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2497..2539 | 705..747 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6835 | 209..306 | 124 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2772 | 705..849 | 121 | 57.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 963..1011 | 240..288 | 119 | 71.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3356 | 707..770 | 118 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1587 | 705..740 | 117 | 80.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1131..1184 | 705..758 | 117 | 68.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6594..6629 | 707..742 | 117 | 80.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8050..8085 | 707..742 | 117 | 80.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 261..292 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 261..292 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6793 | 259..293 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1591 | 256..295 | 110 | 75 | Plus |
| BS | 5142 | BS BS 5142bp | 2032..2074 | 251..290 | 109 | 76.7 | Plus |
FMO01324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:30 Download gff for
FMO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10278-RA | 469..1286 | 30..847 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:03 Download gff for
FMO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1283 | 30..847 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:33 Download gff for
FMO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1283 | 30..847 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:33 Download gff for
FMO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16012739..16012783 | 30..74 | 97 | -> | Plus |
| 3R | 16016228..16016565 | 75..412 | 99 | -> | Plus |
| 3R | 16016709..16017143 | 413..847 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:03 Download gff for
FMO01324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11838461..11838505 | 30..74 | 97 | -> | Plus |
| arm_3R | 11841950..11842287 | 75..412 | 99 | -> | Plus |
| arm_3R | 11842431..11842865 | 413..847 | 94 | | Plus |
