FMO01329.5prime Sequence
1203 bp (1029 high quality bases) assembled on 2008-03-18
> FMO01329.5prime
CAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGACATTCGCC
AATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGCAAGTATAT
CGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGAGCACTTTC
TCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGATCTACCTG
TTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGCGTTGTGGG
CACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTCCCCCATGG
ACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTGCCTGCAAA
GTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAACATCAAGGG
CGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATTACTGCTGA
TTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCAGACCCATC
GAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAGAATCCAGA
TCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTACTACTCGG
ATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTGCCGTCCTC
CACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTGACGGATCT
TCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGATGCCGTGC
GAAAAATTCGCATAATGGTGAAGCAATATCAGCAGCCCGATCGGGAGAAG
GTCAAGGCCATCGAGAAAAAGTTGGACAAGTGCCGAAATCAAGCCAATAA
TCCTGATAGCGAACTCTATAAGGAGCGCCTACGCCGATTGTACACCGATG
AGATGACATGCCCGCCGAGATGCCTCATTCCACATTGCAGATGTGAGCTC
GGACACATCTGCTATGACATCAGCAGCAGCTTTCTAGACATTCGTTTGGC
GCGCGGGCCAGTAGTGTCATATCATATCATAATCATATCATAATCACACT
AGCTAGAGATCTGTCATGACTATGCTGATTCTCACATTAAACGCCGGCGC
AACGACGTTCTGAACATCGATGGAGTTCTGAGCTTACGGATCTACACGGA
CTCAAGCCGAGCTGATTCAAATACGCCCGCCCCTTCACTCATGGAGTATC
CAG
FMO01329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycH-RA | 1065 | CG7405-RA | 10..978 | 9..974 | 4740 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21822006..21822319 | 9..322 | 1555 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21822657..21822885 | 525..753 | 1145 | 100 | Plus |
| 3L | 28110227 | 3L | 21822396..21822597 | 323..524 | 995 | 99.5 | Plus |
| 3L | 28110227 | 3L | 21822941..21823052 | 754..865 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 21823111..21823214 | 866..967 | 420 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:50 has no hits.
FMO01329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:56 Download gff for
FMO01329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7405-RA | 1..984 | 6..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:00 Download gff for
FMO01329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 3..988 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:30 Download gff for
FMO01329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycH-RA | 3..988 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:30 Download gff for
FMO01329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21822657..21822885 | 525..753 | 100 | -> | Plus |
| 3L | 21822941..21823052 | 754..865 | 100 | -> | Plus |
| 3L | 21821999..21822319 | 1..322 | 98 | -> | Plus |
| 3L | 21822396..21822597 | 323..524 | 99 | -> | Plus |
| 3L | 21823111..21823232 | 866..982 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:00 Download gff for
FMO01329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21815757..21815985 | 525..753 | 100 | -> | Plus |
| arm_3L | 21816041..21816152 | 754..865 | 100 | -> | Plus |
| arm_3L | 21815099..21815419 | 1..322 | 98 | -> | Plus |
| arm_3L | 21815496..21815697 | 323..524 | 99 | -> | Plus |
| arm_3L | 21816211..21816332 | 866..982 | 94 | == | Plus |
