FMO01332.5prime Sequence
1208 bp (1020 high quality bases) assembled on 2008-03-18
> FMO01332.5prime
CAGTCGACATGAGCACCGAGTGTCGGATCTGCGGCGAGCGCATCTTCACG
CCGCACCCAAAGAACATCTTCGAGAAGCGCAATCATCGCATTCGGATGGC
CATCGAGCAAATCACGGGCTTAGAGATCGTTTTAGAGAATATGCTGCCCC
AGCACATATGCGCTTGTTGTCTCCTGGACCTGACCCAAGCCGTAGCCTTC
AGGCAGCGATGCCTGGAGACGCACGCAAATCTCCACCAGAGGATCTCCTC
GAAGGCGGGTGTCGCCTCAAAAGGCTCCCCGGAGGTTTCGCCAGTGCTTA
GTGATCCGCTGCTGAAACGGGAGGTGCTGGATGATACAGTAGACACCGAG
GACGATAAGGAGCTACTGGACGATGATAAGGATTTAATGGATGATGATAA
GGATTTCTTGGAGGACGAAAAGCCGATTTTAAGATATCCTCCGGCCAAAA
AAATCCGGATCGAGGACCAAAATTTCCCGAACAGACAGTCCCCACGAGTC
AGGGTCAAGCGGCTTCGTGTGCCTGTGGTCGAGAAGGCAGATAGTCCACC
GCCACCTCCGCGGGAGCACGTCCGAAAGCCCAGAAAGCGGCGACCAAAAC
CCAAGGTCGATCGCTCGATAAAGCGATACGTGTGCGACCAGTGCGGTTGG
TCGTTCAACGATCACAGCAACATGAAGGATCACAAGCTGCGGCACTTCGA
GGAGAAGTTTTCATGCGACGAGTGCGGTCGCAAGTTCTACACCATGCCAC
TGCTCCGATTGCACATTCGAGTCCATCACAAGGGCGAGAAACCGTACGTC
TGCAAGTTCTGCGGTATGGGATTCGCCAATAGTCCCAGCCGCTGTCGTCA
TGAACGTCAAATGCATGCCAACGAGCTGGTGCACCGTGCAAAATATGCGG
CAAACGATTCAACAGCGAGAAGGACGGCTGAGCACGAGAGGGCACAAGAT
GACAACCGGATGTCATATCTGCCTCACATGCAACAGGAGTTCAGGAGGCG
CAGTTTTGCATCGCACTACTCCACAAGTATCCACCGCAAGCGGTCACTGC
TGGTAATGTCAAAGAAGGATTCCAGTTGAGTCGATCGGCCGGACTTCCGG
ATATATGAAAGGCAGCGAATGGAGGACAACCAGCGACTGACCTATGTTGA
TTACTTGGCGAGGAACAATTGAGTACCTCGAGAGCACTCTCCGGAGTAGG
GAGCCTCA
FMO01332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7357-RA | 1645 | CG7357-RA | 106..1317 | 9..1182 | 4940 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17808216..17808948 | 856..124 | 3665 | 100 | Minus |
| 3R | 32079331 | 3R | 17809001..17809117 | 125..9 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 17808088..17808156 | 923..856 | 295 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:36 has no hits.
FMO01332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:01 Download gff for
FMO01332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 106..1173 | 6..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:30 Download gff for
FMO01332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 104..1171 | 6..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:45 Download gff for
FMO01332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7357-RA | 104..1171 | 6..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:45 Download gff for
FMO01332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17809001..17809119 | 6..125 | 99 | | Minus |
| 3R | 17808036..17808155 | 857..968 | 93 | <- | Minus |
| 3R | 17808216..17808946 | 126..856 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:30 Download gff for
FMO01332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13634723..13634841 | 6..125 | 99 | | Minus |
| arm_3R | 13633758..13633877 | 857..968 | 93 | <- | Minus |
| arm_3R | 13633938..13634668 | 126..856 | 100 | <- | Minus |
