FMO01333.5prime Sequence
1196 bp (965 high quality bases) assembled on 2008-03-18
> FMO01333.5prime
AAAAAACCAACTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTG
CTAGGAACGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTC
CGGCAAGAAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGT
CCGCCTCGATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAG
CCGCCCGGCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGAT
CCCCAAGTTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACA
CGGGCGTCACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTT
TACAAGGGCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCT
GGCATCCGATCTCATGGGTATGTTCGAGAAGCGTCGTTTTCGGAACTTCC
TCATCTACGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGAC
TTTGACCCCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACT
GGACAAGAACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCG
ACGATGAGTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAG
CTCTACTCCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCC
CATGTACGGCCTGGGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCA
TCTACGGCGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTC
GGCGAGGGCGGCAAGGTGGTGGGAGTGCGCTCCTGGCGAAGAGGTCGCCA
AGTGCAAGCAGGTCTACTGCGATCCCAGCTACGTGCCCGAAGAAGGTGCG
CAAGCGTGGCAAGGTGATTCGCTGCATTTGCATTCTGGACCATCCGGTGG
CAGCACAAGGATGGTCTCTTCCACGAGATTATCATTCCACAAAAGCAGGT
CGCCCAGTCGGACATCTATGTGTCGCTGTGGCTCACTCATCAGGTGCGCT
AGTGGTCGTGGCATGTCTCGACACGTGGAAACGAATCGAAGTGAGATCAG
GCTGCCTGACTGCTGAACGATCGCCAAAGTTGAACCTCGGAACTTGACGA
TCGAAATGATCGGATCCAACTTATTTCGGGATCTTACTACAGTCGT
FMO01333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdi-RC | 2501 | CG4422-RC | 262..1290 | 24..1046 | 4835 | 98.5 | Plus |
| Gdi-RB | 2421 | CG4422-RB | 182..1210 | 24..1046 | 4835 | 98.5 | Plus |
| Gdi-RA | 1661 | CG4422-RA | 182..1210 | 24..1046 | 4835 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9492632..9493104 | 890..417 | 2290 | 99.4 | Minus |
| 2L | 23513712 | 2L | 9494220..9494615 | 419..24 | 1980 | 100 | Minus |
| 2L | 23513712 | 2L | 9492409..9492547 | 1027..894 | 425 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:53 has no hits.
FMO01333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:02 Download gff for
FMO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4422-RA | 313..1343 | 24..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:01 Download gff for
FMO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1212 | 24..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:33 Download gff for
FMO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdi-RA | 182..1212 | 24..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:33 Download gff for
FMO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9492385..9492545 | 896..1049 | 93 | <- | Minus |
| 2L | 9492628..9493103 | 418..895 | 99 | <- | Minus |
| 2L | 9494222..9494615 | 24..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:01 Download gff for
FMO01333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9492385..9492545 | 896..1049 | 93 | <- | Minus |
| arm_2L | 9492628..9493103 | 418..895 | 99 | <- | Minus |
| arm_2L | 9494222..9494615 | 24..417 | 100 | | Minus |
