FMO01334.5prime Sequence
1214 bp (1035 high quality bases) assembled on 2008-03-18
> FMO01334.5prime
CAGTCGACATGGCGCATTCGACGGGCGGTACGGTGAAGACCGATGAGGTG
AACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATGCTGAAGCC
GGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCT
ACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGC
AACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTT
TATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTA
CCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGT
CATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAA
TCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGC
ACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGAC
AAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGT
GGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCA
GCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAAGAAT
ATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCAATGT
TATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATT
CGACAGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAG
CGAATAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGT
GGCGTTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCG
TGTGCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACA
CGCACAAGTCCACGAAATCACTGCAGTGTGACCAACGACAAGTCCGAATA
CATATCAAGTTCGACAATCTTCGAAATGCACGATGACTTGAGGTGCTCAG
CGTATGGGATTCTTATGGGACTGATAAGCGATGCACGCCGGAAACATGAC
CGAGTCAGTCTGGGTGCCTCACCCTTGCAATCGGTAAGCTACGGACGGCA
GACTGCAAATATGATACGAATTCGTGTCACGTAGAACATGTAGTCTCACA
CGGGTACTCTTCTG
FMO01334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dp-RA | 2526 | CG4654-RA | 614..1742 | 9..1120 | 5195 | 98.2 | Plus |
Dp-RB | 2448 | CG4654-RB | 145..1207 | 75..1120 | 4865 | 98.1 | Plus |
Dp-RC | 1913 | CG4654-RC | 70..1129 | 75..1120 | 4810 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13226002..13226335 | 425..758 | 1670 | 100 | Plus |
2R | 25286936 | 2R | 13226402..13226641 | 757..993 | 1055 | 97.9 | Plus |
2R | 25286936 | 2R | 13225466..13225625 | 75..234 | 800 | 100 | Plus |
2R | 25286936 | 2R | 13225807..13225938 | 293..424 | 660 | 100 | Plus |
2R | 25286936 | 2R | 13223046..13223113 | 9..76 | 340 | 100 | Plus |
2R | 25286936 | 2R | 13225690..13225751 | 233..294 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:30 has no hits.
FMO01334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:48 Download gff for
FMO01334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4654-RA | 650..1778 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:22 Download gff for
FMO01334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dp-RA | 614..1742 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:43 Download gff for
FMO01334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dp-RA | 614..1742 | 9..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:43 Download gff for
FMO01334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13223046..13223112 | 9..75 | 100 | -> | Plus |
2R | 13225467..13225624 | 76..233 | 100 | -> | Plus |
2R | 13225691..13225751 | 234..294 | 100 | -> | Plus |
2R | 13225809..13225938 | 295..424 | 100 | -> | Plus |
2R | 13226002..13226335 | 425..758 | 100 | -> | Plus |
2R | 13226404..13226639 | 759..991 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:22 Download gff for
FMO01334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9110551..9110617 | 9..75 | 100 | -> | Plus |
arm_2R | 9112972..9113129 | 76..233 | 100 | -> | Plus |
arm_2R | 9113196..9113256 | 234..294 | 100 | -> | Plus |
arm_2R | 9113314..9113443 | 295..424 | 100 | -> | Plus |
arm_2R | 9113507..9113840 | 425..758 | 100 | -> | Plus |
arm_2R | 9113909..9114144 | 759..991 | 98 | -> | Plus |