Clone FMO01334 Report

Search the DGRC for FMO01334

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:13
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptDp-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01334.5prime Sequence

1214 bp (1035 high quality bases) assembled on 2008-03-18

> FMO01334.5prime
CAGTCGACATGGCGCATTCGACGGGCGGTACGGTGAAGACCGATGAGGTG
AACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATGCTGAAGCC
GGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCT
ACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGC
AACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTT
TATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTA
CCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGT
CATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAA
TCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGC
ACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGAC
AAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGT
GGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCA
GCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAAGAAT
ATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCAATGT
TATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATT
CGACAGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAG
CGAATAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGT
GGCGTTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCG
TGTGCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACA
CGCACAAGTCCACGAAATCACTGCAGTGTGACCAACGACAAGTCCGAATA
CATATCAAGTTCGACAATCTTCGAAATGCACGATGACTTGAGGTGCTCAG
CGTATGGGATTCTTATGGGACTGATAAGCGATGCACGCCGGAAACATGAC
CGAGTCAGTCTGGGTGCCTCACCCTTGCAATCGGTAAGCTACGGACGGCA
GACTGCAAATATGATACGAATTCGTGTCACGTAGAACATGTAGTCTCACA
CGGGTACTCTTCTG

FMO01334.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dp-RA 2526 CG4654-RA 614..1742 9..1120 5195 98.2 Plus
Dp-RB 2448 CG4654-RB 145..1207 75..1120 4865 98.1 Plus
Dp-RC 1913 CG4654-RC 70..1129 75..1120 4810 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13226002..13226335 425..758 1670 100 Plus
2R 25286936 2R 13226402..13226641 757..993 1055 97.9 Plus
2R 25286936 2R 13225466..13225625 75..234 800 100 Plus
2R 25286936 2R 13225807..13225938 293..424 660 100 Plus
2R 25286936 2R 13223046..13223113 9..76 340 100 Plus
2R 25286936 2R 13225690..13225751 233..294 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:10:30 has no hits.

FMO01334.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:48 Download gff for FMO01334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4654-RA 650..1778 9..1120 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:22 Download gff for FMO01334.5prime
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 614..1742 9..1120 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:43 Download gff for FMO01334.5prime
Subject Subject Range Query Range Percent Splice Strand
Dp-RA 614..1742 9..1120 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:43 Download gff for FMO01334.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13223046..13223112 9..75 100 -> Plus
2R 13225467..13225624 76..233 100 -> Plus
2R 13225691..13225751 234..294 100 -> Plus
2R 13225809..13225938 295..424 100 -> Plus
2R 13226002..13226335 425..758 100 -> Plus
2R 13226404..13226639 759..991 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:22 Download gff for FMO01334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9110551..9110617 9..75 100 -> Plus
arm_2R 9112972..9113129 76..233 100 -> Plus
arm_2R 9113196..9113256 234..294 100 -> Plus
arm_2R 9113314..9113443 295..424 100 -> Plus
arm_2R 9113507..9113840 425..758 100 -> Plus
arm_2R 9113909..9114144 759..991 98 -> Plus