FMO01335.5prime Sequence
1206 bp (1006 high quality bases) assembled on 2008-03-18
> FMO01335.5prime
CAGTCGACATGCGGTCACACAGCGCAGGTCTAAAATTGTTTAAAACTCAT
TTAATTGAAATTAGCCTTAATTTCCAGCCCCCTTGCAAAAAAACGCTAGC
CAGGATGGCCAGCTTGCCAGTGATTCTGCAATGCAGGATCTGCTTGGGCG
ATTTCGAAGAGAGCCAAATGATCTGCCTGTTTGGGGATAAAGGCGAAAGT
GACCTCAGGAAAAAGTTGGAGCTGTGCTGTAGGATTAGGGTTCGCCAATC
CCCGCAGCTGCCCGAGAAGGCCTGCAACAGCTGTTGCGAATTCGTCCAAA
TGTGGTTCAACTTTCGCCAGATGTGCCTGAACTCGCAGGTCTACTGGGAA
ACAAGTTCCTCGGAGAGACCAGAGGCTCTTGCCCAGGCAAGCGATGCCGA
GTATATGTTGTATCTGTACGAGAACCTACATCTGAAACTAGGCACAGAGA
ATCAGGAGAAGGAAGAGATCACCGCAATAGAGGAGGGGGATGAACAGCAG
GAGGATCAGTCCCAGGAAGTTCTCGATTTTAACGGATTTATCATAAACGA
ATCGATTGAGGAGGACGAAGAGCCTAATACGGAAAGTCCTGAGCAGATTC
TGATTTCCCACATGGACTCCTACGTTGATGATCAACAAATGGAAGAACTC
ATTGATGATAAGGGTGAGCTTGTCGAGGAATTATCCAATGCAAACACGTT
TTATGAGGTTGAGTACGGGGACGAGGAACTTCTCATGTCAAGCGCTCCTT
CGCCACATCCCAGCTTCAAAATGGACAAACAAAAGCCGGGAAGGCCTCGC
AAACCGGACGCCGAACTGAAATTCAAACGCAAGGATATCAACGCCAAGGA
AAGGGGGAACCAGCCAAAGTGCAAGGAAGAGAGAAGTTCATGTGCATCCT
GTGCGGAAACGTCTTTTACAAGAAATCTGTTTTCACGCCCACATGATGAC
CCATTCAGAGTACAAGCCCCACCAATGCGAATATGCAATAAATCTTTTCG
ACAATGGCGATGCGAGCACACATCCGTCGTCATACGGCGACGTCATACAG
TGTAATGTACTGCGACCGCTCTCACGATCGCAGCGAACGGTCCGCCATGA
CGTCCACACAACCGCGGTCTTATGCCTGCCCAGAGTGCCGAACCTTTACG
CCAACAGCATCCTAAAAATCATCTCCTTGGCAATTCTGGCTAAAGAGAAT
TATGAC
FMO01335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14710-RB | 1458 | CG14710-RB | 25..1218 | 9..1178 | 5200 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11620402..11621145 | 239..980 | 3620 | 99.7 | Plus |
| 3R | 32079331 | 3R | 11620114..11620346 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:25 has no hits.
FMO01335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:50 Download gff for
FMO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RA | 16..1172 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:24 Download gff for
FMO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 17..1173 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:39 Download gff for
FMO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 17..1173 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:39 Download gff for
FMO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11620106..11620344 | 1..239 | 98 | -> | Plus |
| 3R | 11620403..11621145 | 240..979 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:24 Download gff for
FMO01335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7445828..7446066 | 1..239 | 98 | -> | Plus |
| arm_3R | 7446125..7446867 | 240..979 | 99 | -> | Plus |
