Clone FMO01336 Report

Search the DGRC for FMO01336

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:13
Well:36
Vector:pMK33-CFH-BD
Associated Gene/Transcriptgol-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01336.5prime Sequence

1196 bp (1010 high quality bases) assembled on 2008-03-18

> FMO01336.5prime
CAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCCTTGTTTTG
CTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACCACTACCTT
AGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTACTTTCGAC
CAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTATTGCCGTG
GACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAGCACGGTAA
CATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTACGGAGAGG
GCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCGCCACGGAC
AACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGAACCTTGGG
AGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGTGCGACGGG
GCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGCAAAATGCT
GCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTGGAGAAGAT
GCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAACTTATCAGA
ACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATAATGTAACT
ATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGCAGCTTAAA
TAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTTGATGATTA
TTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCCGTTACATG
CAGGCGAAGACCAACAATCGCGCAATCTCTGCTCTGTTACAAAAAGGCTA
TCATGAAGATTCCAACAAAACCCGGAAATTCAGCGATGAAAAGGACTTGA
TAGCGACTGCTGTGCTATATGCATCGAAGCCTATAGCCCACGGACACATA
CGGATATTGCCGTGCAGCACGAGTTCCATAAAACTGCATAGATCCGTGCT
TATAGAGCATCGACTGTCCATGTGTAAGCTCGACGTCTTGAGTTCTATGG
ATTGTGTTTTTAGGAGGCGAGAAGTATTCTGAATTTCAGCTGATCCTCGC
CAGAACTGCACTGATGAGGCCGGAACAGATTTGGCGATCTTAATCCGAGC
CGCGCACTTGTGATTAGACCTTCGCGAGTAATATGGTTCCTGCACA

FMO01336.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
gol-RD 2520 CG2679-RD 559..1752 9..1180 5065 96.2 Plus
gol-RB 2583 CG2679-RB 559..1752 9..1180 5065 96.2 Plus
gol-RE 3725 CG2679-RE 559..1615 9..1052 4940 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25077369..25077931 571..9 2815 100 Minus
2R 25286936 2R 25077174..25077306 703..571 665 100 Minus
2R 25286936 2R 25075605..25075725 820..701 555 99.2 Minus
2R 25286936 2R 25075398..25075549 966..820 495 96.1 Minus
Blast to na_te.dros performed 2014-11-28 20:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 4054..4130 961..1040 112 66.7 Plus

FMO01336.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:52 Download gff for FMO01336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2679-RB 528..1630 1..1090 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:18 Download gff for FMO01336.5prime
Subject Subject Range Query Range Percent Splice Strand
gol-RB 555..1657 1..1090 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:01 Download gff for FMO01336.5prime
Subject Subject Range Query Range Percent Splice Strand
gol-RB 555..1657 1..1090 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01 Download gff for FMO01336.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25075605..25075722 704..820 99 <- Minus
2R 25077174..25077306 571..703 100 <- Minus
2R 25075242..25075338 967..1056 91 <- Minus
2R 25075397..25075548 821..966 95 <- Minus
2R 25077370..25077935 1..570 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:18 Download gff for FMO01336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20962765..20962861 967..1056 91 <- Minus
arm_2R 20962920..20963071 821..966 95 <- Minus
arm_2R 20963128..20963245 704..820 99 <- Minus
arm_2R 20964697..20964829 571..703 100 <- Minus
arm_2R 20964893..20965458 1..570 99   Minus