FMO01336.5prime Sequence
1196 bp (1010 high quality bases) assembled on 2008-03-18
> FMO01336.5prime
CAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCCTTGTTTTG
CTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACCACTACCTT
AGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTACTTTCGAC
CAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTATTGCCGTG
GACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAGCACGGTAA
CATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTACGGAGAGG
GCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCGCCACGGAC
AACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGAACCTTGGG
AGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGTGCGACGGG
GCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGCAAAATGCT
GCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTGGAGAAGAT
GCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAACTTATCAGA
ACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATAATGTAACT
ATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGCAGCTTAAA
TAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTTGATGATTA
TTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCCGTTACATG
CAGGCGAAGACCAACAATCGCGCAATCTCTGCTCTGTTACAAAAAGGCTA
TCATGAAGATTCCAACAAAACCCGGAAATTCAGCGATGAAAAGGACTTGA
TAGCGACTGCTGTGCTATATGCATCGAAGCCTATAGCCCACGGACACATA
CGGATATTGCCGTGCAGCACGAGTTCCATAAAACTGCATAGATCCGTGCT
TATAGAGCATCGACTGTCCATGTGTAAGCTCGACGTCTTGAGTTCTATGG
ATTGTGTTTTTAGGAGGCGAGAAGTATTCTGAATTTCAGCTGATCCTCGC
CAGAACTGCACTGATGAGGCCGGAACAGATTTGGCGATCTTAATCCGAGC
CGCGCACTTGTGATTAGACCTTCGCGAGTAATATGGTTCCTGCACA
FMO01336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gol-RD | 2520 | CG2679-RD | 559..1752 | 9..1180 | 5065 | 96.2 | Plus |
gol-RB | 2583 | CG2679-RB | 559..1752 | 9..1180 | 5065 | 96.2 | Plus |
gol-RE | 3725 | CG2679-RE | 559..1615 | 9..1052 | 4940 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25077369..25077931 | 571..9 | 2815 | 100 | Minus |
2R | 25286936 | 2R | 25077174..25077306 | 703..571 | 665 | 100 | Minus |
2R | 25286936 | 2R | 25075605..25075725 | 820..701 | 555 | 99.2 | Minus |
2R | 25286936 | 2R | 25075398..25075549 | 966..820 | 495 | 96.1 | Minus |
Blast to na_te.dros performed 2014-11-28 20:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 4054..4130 | 961..1040 | 112 | 66.7 | Plus |
FMO01336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:52 Download gff for
FMO01336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2679-RB | 528..1630 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:18 Download gff for
FMO01336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gol-RB | 555..1657 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:01 Download gff for
FMO01336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gol-RB | 555..1657 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01 Download gff for
FMO01336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25075605..25075722 | 704..820 | 99 | <- | Minus |
2R | 25077174..25077306 | 571..703 | 100 | <- | Minus |
2R | 25075242..25075338 | 967..1056 | 91 | <- | Minus |
2R | 25075397..25075548 | 821..966 | 95 | <- | Minus |
2R | 25077370..25077935 | 1..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:18 Download gff for
FMO01336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20962765..20962861 | 967..1056 | 91 | <- | Minus |
arm_2R | 20962920..20963071 | 821..966 | 95 | <- | Minus |
arm_2R | 20963128..20963245 | 704..820 | 99 | <- | Minus |
arm_2R | 20964697..20964829 | 571..703 | 100 | <- | Minus |
arm_2R | 20964893..20965458 | 1..570 | 99 | | Minus |