FMO01337.5prime Sequence
1221 bp (1036 high quality bases) assembled on 2008-03-18
> FMO01337.5prime
CAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTCACCAGCTA
CCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCATCGCTGGT
GATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGTGATAAAAA
AACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCCACGATCAG
TACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCGTGTCTGAA
GTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTGTTTTGTGC
GCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTATTTGGTACA
AAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTTGTGATGCG
GGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTCCGCGTGTG
CGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATGCCGGGGCT
TTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCGCAGAGCAG
CCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAGTAGTAACA
ACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAATTGGGTTCA
ATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATTAGGGACAA
GCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCGGACCGTGC
TCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATGCTAATCCG
CGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACGAGCCTGTC
GCCGCGAGTCATCCGAGTATGGTTCCAGAACAAGCGCTGCAAGGACAAGA
AGAGACCATTTCAGATGAAGCTGCAATGCAGCAGAGATGAGGGTCGCAAG
CTGGGCTACGGCGCCATGCAGGCATCCCCATGATCGCCAGTTCCCCGGTG
CGCATGACTCCCCCTGAATCTTCAGGCCTGGATGTGCAGAACTATTCACG
CCATGAAAGCTTAGCGACTTCGCCCTTCAGGCGATCTCGACAGCATGAAC
GATCAATACCCACCGCCCGCATTCAGCAATGTCAATCGAGGCAGGCTACG
ACTGGAACGATGCAATTCTGCCGCGAATCGGCACTGCATTCCGGGGCAGA
GAAACTCTCTCCACCGCATCA
FMO01337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tup-RC | 2270 | CG10619-RC | 467..1680 | 9..1198 | 5175 | 96.5 | Plus |
| tup-RB | 3314 | CG10619-RB | 467..1680 | 9..1198 | 5175 | 96.5 | Plus |
| tup-RA | 3251 | CG10619-RA | 467..1680 | 9..1198 | 5175 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18865468..18865659 | 339..148 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 18864095..18864285 | 657..467 | 955 | 100 | Minus |
| 2L | 23513712 | 2L | 18880657..18880795 | 147..9 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 18861971..18862122 | 926..775 | 685 | 96.7 | Minus |
| 2L | 23513712 | 2L | 18864392..18864525 | 469..336 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18862180..18862303 | 778..655 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 18861701..18861897 | 1123..939 | 335 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 50..96 | 120 | 75 | Plus |
FMO01337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:54 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:25 Download gff for
FMO01337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tup-RA | 467..1613 | 9..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:06 Download gff for
FMO01337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tup-RA | 467..1613 | 9..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:06 Download gff for
FMO01337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
| 2L | 18880657..18880795 | 9..147 | 100 | | Minus |
| 2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
| 2L | 18864393..18864523 | 338..468 | 100 | <- | Minus |
| 2L | 18861956..18862118 | 779..938 | 96 | <- | Minus |
| 2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:25 Download gff for
FMO01337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18861956..18862118 | 779..938 | 96 | <- | Minus |
| arm_2L | 18862180..18862300 | 658..778 | 100 | <- | Minus |
| arm_2L | 18864095..18864283 | 469..657 | 100 | <- | Minus |
| arm_2L | 18864393..18864523 | 338..468 | 100 | <- | Minus |
| arm_2L | 18865470..18865659 | 148..337 | 100 | <- | Minus |
| arm_2L | 18880657..18880795 | 9..147 | 100 | | Minus |
