FMO01342.5prime Sequence
1215 bp (1051 high quality bases) assembled on 2008-03-18
> FMO01342.5prime
CAGTCGACATGGCTTCCAAATCTGCGTACGAAAAAACTTTGGTAGTAAAC
ATTGCCAATTTTGAAAAAATTCAGAACTTTTTAAATGACAAGGAAAAGTA
CAAGGAGATTCTAGAAAACAGCGAGAATTTCAACACTCGTCTATGCATTG
AACGTCGACTTCGCATGCCATTCCTCGATCCCCAGACAGGTGTCGCACAG
ACACATTGCTCCCTCTTTATGAAAAAAAAACAGCGAATGCCAGGTCTTCG
ACATGGTCAGATATACACTTATCCATCGTCTCGGTGGCGCAAACCAAAAC
GTCAGTACTTACTTAACCCGAATCAAAGTTTCCGAGCCTATCAGTATCGC
GAGCACAACCTTCAGCACTCCCACCATCAAACGCATCAGCATCACCATCA
TATACCTTCGTCTGGCGTTGCTGTACCACAAAATCCTCACTTAGCTGAAA
GCGCAGCCATTGCTGCTACGGATGGCAACTCCATGGGAGCATCAGGAGAT
AATGATAGTAAGGACTCACATGCAAACGTCGAAAAAGAATGGTTCCACGA
TGAAATGGACACATCACATTTTCATCATGGCGATGAATTTGAGGATGACT
TTGATTCAGATAACGATTTTGATGAGTCTTACACCAGCCGGGGCAAACGC
AAAAAGTGTTCGCGTCCTAGACGAACAAATGCAAACGTAGAGGGTACTCC
CAAACGGGGACGTAAAGGTGGTGGCAATCGTCGAAAGAACGCCGTTGAGG
GAGAATCTGATCGAAAACGTAGAGCCGGTGGAAATAGTGCAAATACATCC
GCAGCCGCAGCGGCAGCTGCCGCCGCTGTCGCACATGCAGCATGTACTGC
AGCTGCTGTCGCTAGCACTGGGCTCTATGCATCTCATTCCAACTCAGCTT
CGCCTATTCCCATAAATGACGACATTCACAGTCAGGACTCATACTGCAAC
AAACATATCGTCGTCGTACGATAGACTCAGCGATGCTGGAGCTCAATGAC
TCATTCCCTAGCACATGCTGCATAAACGCGGGCCTGACACCTCAATGTTG
CATGCGCATCGGTGCAAAAGAACAATCAACGTGTTTGCTACTGTATAAGT
CAACAACGGTAAAACTGACAGCGCCACCCACACCTTATGGGACCTGCTGA
ATCACGGATTAAAATCAATTGGCCGAGAGACGTGATTCTGGTCCTCGCAC
ACGTGTGCCTTTATC
FMO01342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1767 | CG2682-RA | 201..1363 | 7..1138 | 4985 | 96.9 | Plus |
| d4-RD | 1764 | CG2682-RD | 201..1360 | 7..1138 | 4930 | 96.6 | Plus |
| d4-RC | 1761 | CG2682-RC | 201..1357 | 7..1138 | 4885 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5294263..5294712 | 7..456 | 2250 | 100 | Plus |
| 2R | 25286936 | 2R | 5294794..5295064 | 454..724 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 5295115..5295367 | 723..973 | 1165 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:47:34 has no hits.
FMO01342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:12 Download gff for
FMO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2682-RA | 176..1313 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:18 Download gff for
FMO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 196..1333 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:00 Download gff for
FMO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 196..1333 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:00 Download gff for
FMO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5294258..5294712 | 1..456 | 99 | -> | Plus |
| 2R | 5294797..5295063 | 457..723 | 100 | -> | Plus |
| 2R | 5295116..5295531 | 724..1111 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:18 Download gff for
FMO01342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1181763..1182217 | 1..456 | 99 | -> | Plus |
| arm_2R | 1182302..1182568 | 457..723 | 100 | -> | Plus |
| arm_2R | 1182621..1183036 | 724..1111 | 93 | | Plus |
