FMO01343.5prime Sequence
1230 bp (1010 high quality bases) assembled on 2008-03-18
> FMO01343.5prime
ATAAAACCAAGTTATCAGTCGACATGGCCGACACGAAATCCGGTAGTGGT
CGGCATTCGGCTGCCGGGGGAAGTGGAAACGCCGTCCTGTCGCCCTTGGG
GCAGGGTCCTGCGAACTTGGAGTGTAAGGACTTTCAGGAGTATCTGCGCA
CCCGCCAAACGCCAGAGTCGCTGGAGAAGCTGTACAACTATCCGCCCATT
TGTTTGGCCGTTTTTCGGGAGCTTCCAGAGATAGCCCGGCAGTTTATCAT
AAGGATACTGTTCGTGGATCAGCCTGTGCCACAAGCGGTGGTCACATCAT
GGGGTGCCCAACGTTGTGCCAAGGAGCAAGCCGAGGCAACCAGCTGCCTG
ACGGCTTTGAACGTCTGGCGGGTCACAGCCATTCCGGGTGGCCTTTCTGC
GTGGGAGCTCTCGCCCACCTTCAAGAAAAGCGTACGCCAGGTGCTGCTGG
GCGGCGGAAAACCTTGGCCTATGACCAACACGCTGGATAAGGACTCGAAG
CCCAGGGACATTGCTTTTCTGGATACATACGCCATGTCCCGCTGGCGTTG
CGTGTTGCACTACATGGTCGGCACCGGAAATCGCAATGGCACCGATGCGG
AGGCCATTAGTCCGGACGCCGTTCGGATTCTGCTGCACGCCAATCTCATG
AAACGTGATGAACGAGACGGTATCACAATAACCCGGCAGGGCTTTCAGTT
CCTGCTGCTGGACACGCGAGCTCAGGTGTGGCATTTTATGCTACAGTACC
TGGACACGTGCGAAGAAAGAGGAATCAGCCTGCCGGAATGCTTGTCCATG
TTGTTCCAGCTCAGTTTTTCAACGCTGGGCAGGGATTACAGTTCCGAGGG
CATGAACAGTCAGATGCTGACATTCCTGCAGCATCTACGGGAGTTTGGAC
TGGTCTTCCAACGTAAGCGTAAAGAGGGACGCTTCTATCCCACACGTTTG
GCCTCTGAATGTGACAGCAGGAGGCGGCTGCGACTGCATCTGTTGCATGG
ATGAGGAGCCACTCAGACTGTTGCTACATGTGGTGAGACGACTACGAGTG
TATGCCTACACTGATCTCGCTCCAGTAGCGGGTAAGTCTGTTCACGGAGC
CTTCTCTACGCTTCCAATCTCGTCGGGGGCGTGCTACCGCGATCATCGCC
AGGGTTGCGGCGATTAGCAGCCGATTGTCTCGTATCGGGAGCGATGGGCC
CTCATAATGGGCCATAGTGGTCTGAATAAT
FMO01343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 27..1168 | 19..1143 | 5110 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15579465..15580152 | 1008..323 | 3220 | 98.8 | Minus |
| 3L | 28110227 | 3L | 15580207..15580511 | 323..19 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:56 has no hits.
FMO01343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:14 Download gff for
FMO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7764-RA | 165..1376 | 19..1199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:17 Download gff for
FMO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 27..1238 | 19..1199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:22 Download gff for
FMO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 27..1238 | 19..1199 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:22 Download gff for
FMO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15579245..15580152 | 323..1199 | 95 | <- | Minus |
| 3L | 15580208..15580511 | 19..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:17 Download gff for
FMO01343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572345..15573252 | 323..1199 | 95 | <- | Minus |
| arm_3L | 15573308..15573611 | 19..322 | 99 | | Minus |
